RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 ZNF594Q96JF6 807 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 TOR4AQ9NXH8 423 aa9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 NOVA2Q9UNW9 492 aaKnown RBP9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 FAM196BA6NMK8 535 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZBTB7BO15156 539 aaPredicted RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 ERVK-9P63128 1117 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 DHX9Q08211 1270 aaKnown RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 CCDC125Q86Z20 511 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 STK32AQ8WU08 396 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 DNAAF2Q9NVR5 837 aaKnown RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 PCDHGA11Q9Y5H2 935 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 LILRA1O75019 489 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 MYCP01106 439 aaPredicted RBP9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 CSB-PGBD3P0DP91 1061 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 CC2D2BQ6DHV5 1058 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 TRIM50Q86XT4 487 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 OSBPL3Q9H4L5 887 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 STAU1O95793 577 aaKnown RBP9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 SMPD1P17405 629 aa9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 ADD1P35611 737 aaKnown RBP9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 SIRT1Q96EB6 747 aa9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 DKK1O94907 266 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 PDIA4P13667 645 aaKnown RBP9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ATP1A2P50993 1020 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 MYT1Q01538 1121 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 PSME1Q06323 249 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 DPYDQ12882 1025 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ELOAQ14241 798 aaKnown RBP9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 TMEM164Q5U3C3 297 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ANKMY2Q8IV38 441 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 TMEM88BA6NKF7 163 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20EP86478 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20CP86479 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20DP86480 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20BP86481 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20AP86496 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 LARGE2Q8N3Y3 721 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 TPCN2Q8NHX9 752 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ITPKCQ96DU7 683 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZFAND3Q9H8U3 227 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 EMILIN1Q9Y6C2 1016 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZIC2O95409 532 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 CBLBQ13191 982 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 CCDC102BQ68D86 513 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 HPS1Q92902 700 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 KLF16Q9BXK1 252 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 ESF1Q9H501 851 aaKnown RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 PGPEP1Q9NXJ5 209 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 SFI1A8K8P3 1242 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 WDR4P57081 412 aaKnown RBP9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 SIX5Q8N196 739 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 PDZRN3Q9UPQ7 1066 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 TIMP2P16035 220 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 TRAIPQ9BWF2 469 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 USTQ9Y2C2 406 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 LGR5O75473 907 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 RGS20O76081 388 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 RAB6BQ9NRW1 208 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 TMEM229AB2RXF0 380 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SCNN1DP51172 638 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM69CQ0P6D2 419 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 AGBL1Q96MI9 1066 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SLAIN2Q9P270 581 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SEC13P55735 322 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 CYP2U1Q7Z449 544 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 KDF1Q8NAX2 398 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 ETNK1Q9HBU6 452 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 ADH1AP07327 375 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 GDF10P55107 478 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 Q6ZVU0 165 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 TSEN2Q8NCE0 465 aaKnown RBP9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 ARHGEF10LQ9HCE6 1279 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 ZNF358Q9NW07 568 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 RBM19Q9Y4C8 960 aaKnown RBP9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM187AA6NFU0 413 aa9.14□□□□□ -0.95
HMGB3P19-201ENST00000403971 SERTAD1Q9UHV2 236 aa9.14□□□□□ -0.95
HMGB3P19-201ENST00000403971 RELBQ01201 579 aa9.13□□□□□ -0.95
HMGB3P19-201ENST00000403971 TRIM52Q96A61 297 aa9.13□□□□□ -0.95
HMGB3P19-201ENST00000403971 GNRH1P01148 92 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 INHAP05111 366 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 PDE4CQ08493 712 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 GAS2L2Q8NHY3 880 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 HINFPQ9BQA5 517 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 ZNF395Q9H8N7 513 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 CAPN5O15484 640 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 GFRA3O60609 400 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 PRMT3O60678 531 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 IL2RAP01589 272 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 AEBP1Q8IUX7 1158 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 TNS4Q8IZW8 715 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 A0A1W2PRU2 124 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 PTGIRP43119 386 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 TRIM26Q12899 539 aaPredicted RBP9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 SWI5Q1ZZU3 235 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 MEIOBQ8N635 442 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 CLP1Q92989 425 aaKnown RBP9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 PRIMPOLQ96LW4 560 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 MEN1O00255 615 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms