RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 RGPD2P0DJD1 1756 aa17.09■□□□□ 0.33
SPTLC1P3-201ENST00000403408 FBLN1P23142 703 aa17.08■□□□□ 0.32
SPTLC1P3-201ENST00000403408 POLD1P28340 1107 aa17.08■□□□□ 0.32
SPTLC1P3-201ENST00000403408 TFCP2L1Q9NZI6 479 aa17.08■□□□□ 0.32
SPTLC1P3-201ENST00000403408 COL23A1Q86Y22 540 aaPredicted RBP17.07■□□□□ 0.32
SPTLC1P3-201ENST00000403408 IP6K1Q92551 441 aa17.07■□□□□ 0.32
SPTLC1P3-201ENST00000403408 LTV1Q96GA3 475 aaPredicted RBP17.07■□□□□ 0.32
SPTLC1P3-201ENST00000403408 ANKRD36BQ8N2N9 1353 aa17.06■□□□□ 0.32
SPTLC1P3-201ENST00000403408 MEGF6O75095 1541 aa17.05■□□□□ 0.32
SPTLC1P3-201ENST00000403408 EDC4Q6P2E9 1401 aaKnown RBP17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 A0A1W2PP64 1363 aa17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 MSL1Q68DK7 614 aa17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 TMC1Q8TDI8 760 aa17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 SYTL4Q96C24 671 aaPredicted RBP17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 ATP10DQ9P241 1426 aa17.04■□□□□ 0.32
SPTLC1P3-201ENST00000403408 AMIGO3Q86WK7 504 aa17.02■□□□□ 0.32
SPTLC1P3-201ENST00000403408 CCNL1Q9UK58 526 aaPredicted RBP17.02■□□□□ 0.32
SPTLC1P3-201ENST00000403408 MAP3K19Q56UN5 1328 aa17.01■□□□□ 0.31
SPTLC1P3-201ENST00000403408 NEUROD1Q13562 356 aa17.01■□□□□ 0.31
SPTLC1P3-201ENST00000403408 HOXC9P31274 260 aa17■□□□□ 0.31
SPTLC1P3-201ENST00000403408 ADCY9O60503 1353 aa17■□□□□ 0.31
SPTLC1P3-201ENST00000403408 GRIN3BO60391 1043 aa16.99■□□□□ 0.31
SPTLC1P3-201ENST00000403408 SMIM5Q71RC9 77 aa16.99■□□□□ 0.31
SPTLC1P3-201ENST00000403408 HDGFL2Q7Z4V5 671 aaPredicted RBP16.99■□□□□ 0.31
SPTLC1P3-201ENST00000403408 ZCRB1Q8TBF4 217 aaKnown RBP16.99■□□□□ 0.31
SPTLC1P3-201ENST00000403408 NBPF6Q5VWK0 638 aa16.98■□□□□ 0.31
SPTLC1P3-201ENST00000403408 NBPF4Q96M43 638 aa16.98■□□□□ 0.31
SPTLC1P3-201ENST00000403408 TAF1LQ8IZX4 1826 aa16.98■□□□□ 0.31
SPTLC1P3-201ENST00000403408 USHBP1Q8N6Y0 703 aa16.97■□□□□ 0.31
SPTLC1P3-201ENST00000403408 C5P01031 1676 aa16.97■□□□□ 0.31
SPTLC1P3-201ENST00000403408 TOGARAM1Q9Y4F4 1720 aa16.96■□□□□ 0.31
SPTLC1P3-201ENST00000403408 CARD11Q9BXL7 1154 aa16.95■□□□□ 0.3
SPTLC1P3-201ENST00000403408 ZNF526Q8TF50 670 aaPredicted RBP16.94■□□□□ 0.3
SPTLC1P3-201ENST00000403408 WWC3Q9ULE0 1092 aa16.94■□□□□ 0.3
SPTLC1P3-201ENST00000403408 PCNTO95613 3336 aa16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 USP47Q96K76 1375 aa16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 RRS1Q15050 365 aaKnown RBP16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 TESK2Q96S53 571 aa16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 TERF2IPQ9NYB0 399 aa16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 CD2APQ9Y5K6 639 aa16.93■□□□□ 0.3
SPTLC1P3-201ENST00000403408 HSPA6P17066 643 aa16.92■□□□□ 0.3
SPTLC1P3-201ENST00000403408 AMPHP49418 695 aa16.92■□□□□ 0.3
SPTLC1P3-201ENST00000403408 GPBP1L1Q9HC44 474 aaPredicted RBP16.92■□□□□ 0.3
SPTLC1P3-201ENST00000403408 PUS7Q96PZ0 661 aaKnown RBP16.91■□□□□ 0.3
SPTLC1P3-201ENST00000403408 UBR3Q6ZT12 1888 aa16.9■□□□□ 0.3
SPTLC1P3-201ENST00000403408 COG3Q96JB2 828 aa16.9■□□□□ 0.3
SPTLC1P3-201ENST00000403408 C4BP0C0L5 1744 aa16.9■□□□□ 0.3
SPTLC1P3-201ENST00000403408 PALLDQ8WX93 1383 aa16.89■□□□□ 0.3
SPTLC1P3-201ENST00000403408 ITGB4P16144 1822 aa16.89■□□□□ 0.29
SPTLC1P3-201ENST00000403408 KIF3CO14782 793 aa16.89■□□□□ 0.29
SPTLC1P3-201ENST00000403408 CYP27B1O15528 508 aa16.89■□□□□ 0.29
SPTLC1P3-201ENST00000403408 MAP2P11137 1827 aaKnown RBP16.89■□□□□ 0.29
SPTLC1P3-201ENST00000403408 IGSF1Q8N6C5 1336 aa16.88■□□□□ 0.29
SPTLC1P3-201ENST00000403408 HSP90AB2PQ58FF8 381 aa16.87■□□□□ 0.29
SPTLC1P3-201ENST00000403408 MPRIPQ6WCQ1 1025 aa16.87■□□□□ 0.29
SPTLC1P3-201ENST00000403408 RTL1A6NKG5 1358 aa16.87■□□□□ 0.29
SPTLC1P3-201ENST00000403408 FYB1O15117 783 aa16.86■□□□□ 0.29
SPTLC1P3-201ENST00000403408 GGNBP2Q9H3C7 697 aa16.86■□□□□ 0.29
SPTLC1P3-201ENST00000403408 PHF14O94880 888 aa16.85■□□□□ 0.29
SPTLC1P3-201ENST00000403408 PIGBQ92521 554 aa16.85■□□□□ 0.29
SPTLC1P3-201ENST00000403408 KIAA1551Q9HCM1 1747 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 ST20-MTHFSA0A0A6YYL1 179 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 LINC00116Q8NCU8 138 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 FLAD1Q8NFF5 587 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 CGNL1Q0VF96 1302 aa16.84■□□□□ 0.29
SPTLC1P3-201ENST00000403408 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.83■□□□□ 0.28
SPTLC1P3-201ENST00000403408 TATP17735 454 aaPredicted RBP16.83■□□□□ 0.28
SPTLC1P3-201ENST00000403408 CICQ96RK0 1608 aaPredicted RBP16.83■□□□□ 0.28
SPTLC1P3-201ENST00000403408 PCDH11XQ9BZA7 1347 aa16.82■□□□□ 0.28
SPTLC1P3-201ENST00000403408 PCDH11YQ9BZA8 1340 aa16.82■□□□□ 0.28
SPTLC1P3-201ENST00000403408 DNAJC5GQ8N7S2 189 aa16.82■□□□□ 0.28
SPTLC1P3-201ENST00000403408 PKD1L3Q7Z443 1732 aa16.82■□□□□ 0.28
SPTLC1P3-201ENST00000403408 INSRP06213 1382 aa16.81■□□□□ 0.28
SPTLC1P3-201ENST00000403408 ITPK1Q13572 414 aa16.81■□□□□ 0.28
SPTLC1P3-201ENST00000403408 AK7Q96M32 723 aa16.81■□□□□ 0.28
SPTLC1P3-201ENST00000403408 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
SPTLC1P3-201ENST00000403408 NCAPD2Q15021 1401 aa16.79■□□□□ 0.28
SPTLC1P3-201ENST00000403408 N4BP2Q86UW6 1770 aaPredicted RBP16.79■□□□□ 0.28
SPTLC1P3-201ENST00000403408 NKX1-1Q15270 411 aaPredicted RBP16.79■□□□□ 0.28
SPTLC1P3-201ENST00000403408 KIF13BQ9NQT8 1826 aa16.79■□□□□ 0.28
SPTLC1P3-201ENST00000403408 LOC102724428A0A0B4J2F2 783 aa16.78■□□□□ 0.28
SPTLC1P3-201ENST00000403408 SIK1P57059 783 aa16.78■□□□□ 0.28
SPTLC1P3-201ENST00000403408 ASAP1Q9ULH1 1129 aa16.78■□□□□ 0.28
SPTLC1P3-201ENST00000403408 EMILIN1Q9Y6C2 1016 aa16.78■□□□□ 0.28
SPTLC1P3-201ENST00000403408 SSFA2P28290 1259 aa16.77■□□□□ 0.28
SPTLC1P3-201ENST00000403408 SMARCC1Q92922 1105 aaPredicted RBP16.77■□□□□ 0.28
SPTLC1P3-201ENST00000403408 FLT4P35916 1363 aa16.77■□□□□ 0.27
SPTLC1P3-201ENST00000403408 SLC4A9Q96Q91 983 aa16.76■□□□□ 0.27
SPTLC1P3-201ENST00000403408 SMG6Q86US8 1419 aaKnown RBP16.76■□□□□ 0.27
SPTLC1P3-201ENST00000403408 KIF20BQ96Q89 1820 aa16.75■□□□□ 0.27
SPTLC1P3-201ENST00000403408 MMP10P09238 476 aa16.75■□□□□ 0.27
SPTLC1P3-201ENST00000403408 CARD14Q9BXL6 1004 aa16.75■□□□□ 0.27
SPTLC1P3-201ENST00000403408 NSD3Q9BZ95 1437 aa16.74■□□□□ 0.27
SPTLC1P3-201ENST00000403408 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
SPTLC1P3-201ENST00000403408 GNPATO15228 680 aa16.74■□□□□ 0.27
SPTLC1P3-201ENST00000403408 HTRA3P83110 453 aa16.74■□□□□ 0.27
SPTLC1P3-201ENST00000403408 NMRK2Q9NPI5 230 aa16.74■□□□□ 0.27
SPTLC1P3-201ENST00000403408 ATG3Q9NT62 314 aa16.73■□□□□ 0.27
SPTLC1P3-201ENST00000403408 BRCA1P38398 1863 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms