RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 RGPD3A6NKT7 1758 aaPredicted RBP23.9■■□□□ 1.42
UPK3A-202ENST00000396082 RGPD4Q7Z3J3 1758 aa23.9■■□□□ 1.42
UPK3A-202ENST00000396082 NUP188Q5SRE5 1749 aa23.9■■□□□ 1.42
UPK3A-202ENST00000396082 SHANK3Q9BYB0 1731 aa23.87■■□□□ 1.41
UPK3A-202ENST00000396082 PLSCR1O15162 318 aa23.87■■□□□ 1.41
UPK3A-202ENST00000396082 KCNQ2O43526 872 aa23.87■■□□□ 1.41
UPK3A-202ENST00000396082 R3HDM1Q15032 1099 aaKnown RBP23.86■■□□□ 1.41
UPK3A-202ENST00000396082 AMER1Q5JTC6 1135 aaPredicted RBP23.86■■□□□ 1.41
UPK3A-202ENST00000396082 NBPF14Q5TI25 921 aa23.86■■□□□ 1.41
UPK3A-202ENST00000396082 BTAF1O14981 1849 aa23.83■■□□□ 1.41
UPK3A-202ENST00000396082 EIF4A2Q14240 407 aaKnown RBP23.83■■□□□ 1.41
UPK3A-202ENST00000396082 EYA1Q99502 592 aa23.83■■□□□ 1.41
UPK3A-202ENST00000396082 DOT1LQ8TEK3 1739 aa23.83■■□□□ 1.41
UPK3A-202ENST00000396082 CC2D1BQ5T0F9 858 aaKnown RBP23.82■■□□□ 1.4
UPK3A-202ENST00000396082 SYTL4Q96C24 671 aaPredicted RBP23.82■■□□□ 1.4
UPK3A-202ENST00000396082 PCDH11XQ9BZA7 1347 aa23.82■■□□□ 1.4
UPK3A-202ENST00000396082 PCDH11YQ9BZA8 1340 aa23.82■■□□□ 1.4
UPK3A-202ENST00000396082 NCAPD2Q15021 1401 aa23.81■■□□□ 1.4
UPK3A-202ENST00000396082 PER1O15534 1290 aaPredicted RBP23.8■■□□□ 1.4
UPK3A-202ENST00000396082 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
UPK3A-202ENST00000396082 PKD1L3Q7Z443 1732 aa23.79■■□□□ 1.4
UPK3A-202ENST00000396082 TXNRD1Q16881 649 aa23.78■■□□□ 1.4
UPK3A-202ENST00000396082 SPG7Q9UQ90 795 aa23.77■■□□□ 1.4
UPK3A-202ENST00000396082 PRIM1P49642 420 aaKnown RBP23.76■■□□□ 1.39
UPK3A-202ENST00000396082 PROM2Q8N271 834 aa23.74■■□□□ 1.39
UPK3A-202ENST00000396082 IGSF1Q8N6C5 1336 aa23.74■■□□□ 1.39
UPK3A-202ENST00000396082 NPC1L1Q9UHC9 1359 aa23.73■■□□□ 1.39
UPK3A-202ENST00000396082 CYP27B1O15528 508 aa23.72■■□□□ 1.39
UPK3A-202ENST00000396082 MTHFSP49914 203 aa23.72■■□□□ 1.39
UPK3A-202ENST00000396082 LRP5O75197 1615 aa23.72■■□□□ 1.39
UPK3A-202ENST00000396082 ANO8Q9HCE9 1232 aaPredicted RBP23.71■■□□□ 1.39
UPK3A-202ENST00000396082 STK32BQ9NY57 414 aa23.71■■□□□ 1.39
UPK3A-202ENST00000396082 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.7■■□□□ 1.38
UPK3A-202ENST00000396082 PLEKHG2Q9H7P9 1386 aa23.67■■□□□ 1.38
UPK3A-202ENST00000396082 IFNL2Q8IZJ0 200 aa23.67■■□□□ 1.38
UPK3A-202ENST00000396082 TOGARAM1Q9Y4F4 1720 aa23.67■■□□□ 1.38
UPK3A-202ENST00000396082 IL13P35225 146 aa23.66■■□□□ 1.38
UPK3A-202ENST00000396082 SULT6B1Q6IMI4 303 aa23.66■■□□□ 1.38
UPK3A-202ENST00000396082 MPRIPQ6WCQ1 1025 aa23.66■■□□□ 1.38
UPK3A-202ENST00000396082 AEBP1Q8IUX7 1158 aa23.66■■□□□ 1.38
UPK3A-202ENST00000396082 PLEKHO1Q53GL0 409 aaPredicted RBP23.65■■□□□ 1.38
UPK3A-202ENST00000396082 SLC27A3Q5K4L6 730 aa23.65■■□□□ 1.38
UPK3A-202ENST00000396082 ITGB4P16144 1822 aa23.65■■□□□ 1.38
UPK3A-202ENST00000396082 LY75O60449 1722 aa23.64■■□□□ 1.38
UPK3A-202ENST00000396082 PHKG2P15735 406 aa23.64■■□□□ 1.37
UPK3A-202ENST00000396082 SLC15A2Q16348 729 aa23.64■■□□□ 1.37
UPK3A-202ENST00000396082 PAPPAQ13219 1627 aa23.63■■□□□ 1.37
UPK3A-202ENST00000396082 DIAPH1O60610 1272 aaKnown RBP23.63■■□□□ 1.37
UPK3A-202ENST00000396082 NKX1-1Q15270 411 aaPredicted RBP23.63■■□□□ 1.37
UPK3A-202ENST00000396082 AMOTQ4VCS5 1084 aa23.62■■□□□ 1.37
UPK3A-202ENST00000396082 LRRC4BQ9NT99 713 aa23.62■■□□□ 1.37
UPK3A-202ENST00000396082 ZNF530Q6P9A1 599 aaPredicted RBP23.61■■□□□ 1.37
UPK3A-202ENST00000396082 CCNL1Q9UK58 526 aaPredicted RBP23.61■■□□□ 1.37
UPK3A-202ENST00000396082 KDRP35968 1356 aa23.61■■□□□ 1.37
UPK3A-202ENST00000396082 CASZ1Q86V15 1759 aa23.6■■□□□ 1.37
UPK3A-202ENST00000396082 HSP90AB1P08238 724 aaKnown RBP23.59■■□□□ 1.37
UPK3A-202ENST00000396082 KCNQ4P56696 695 aa23.59■■□□□ 1.37
UPK3A-202ENST00000396082 TMOD3Q9NYL9 352 aa23.59■■□□□ 1.37
UPK3A-202ENST00000396082 PALLDQ8WX93 1383 aa23.59■■□□□ 1.37
UPK3A-202ENST00000396082 HMOX1P09601 288 aa23.58■■□□□ 1.37
UPK3A-202ENST00000396082 C1orf141Q5JVX7 400 aa23.58■■□□□ 1.37
UPK3A-202ENST00000396082 SPON1Q9HCB6 807 aa23.58■■□□□ 1.37
UPK3A-202ENST00000396082 ZNF827Q17R98 1081 aa23.57■■□□□ 1.36
UPK3A-202ENST00000396082 SMARCC1Q92922 1105 aaPredicted RBP23.57■■□□□ 1.36
UPK3A-202ENST00000396082 CFAP53Q96M91 514 aa23.57■■□□□ 1.36
UPK3A-202ENST00000396082 U2SURPO15042 1029 aaKnown RBP23.56■■□□□ 1.36
UPK3A-202ENST00000396082 PIGBQ92521 554 aa23.56■■□□□ 1.36
UPK3A-202ENST00000396082 PDGFDQ9GZP0 370 aaPredicted RBP23.56■■□□□ 1.36
UPK3A-202ENST00000396082 COL3A1P02461 1466 aaPredicted RBP23.56■■□□□ 1.36
UPK3A-202ENST00000396082 DCAF5Q96JK2 942 aa23.55■■□□□ 1.36
UPK3A-202ENST00000396082 ZBTB7AO95365 584 aa23.54■■□□□ 1.36
UPK3A-202ENST00000396082 PPP1R1BQ9UD71 204 aaPredicted RBP23.54■■□□□ 1.36
UPK3A-202ENST00000396082 SRCAPQ6ZRS2 3230 aa23.53■■□□□ 1.36
UPK3A-202ENST00000396082 AKT1S1Q96B36 256 aa23.53■■□□□ 1.36
UPK3A-202ENST00000396082 TFCP2L1Q9NZI6 479 aa23.53■■□□□ 1.36
UPK3A-202ENST00000396082 C5P01031 1676 aa23.53■■□□□ 1.36
UPK3A-202ENST00000396082 HMGB2P26583 209 aaKnown RBP23.52■■□□□ 1.36
UPK3A-202ENST00000396082 PPP2R1AP30153 589 aa23.52■■□□□ 1.36
UPK3A-202ENST00000396082 ERVV-2B6SEH9 535 aa23.51■■□□□ 1.35
UPK3A-202ENST00000396082 KDM6AO15550 1401 aaPredicted RBP23.5■■□□□ 1.35
UPK3A-202ENST00000396082 QSER1Q2KHR3 1735 aa23.5■■□□□ 1.35
UPK3A-202ENST00000396082 CABP4P57796 275 aa23.5■■□□□ 1.35
UPK3A-202ENST00000396082 TUBGCP6Q96RT7 1819 aa23.49■■□□□ 1.35
UPK3A-202ENST00000396082 ZEB1P37275 1124 aaPredicted RBP23.49■■□□□ 1.35
UPK3A-202ENST00000396082 ASAP1Q9ULH1 1129 aa23.49■■□□□ 1.35
UPK3A-202ENST00000396082 ATF5Q9Y2D1 282 aaPredicted RBP23.49■■□□□ 1.35
UPK3A-202ENST00000396082 TAF1LQ8IZX4 1826 aa23.49■■□□□ 1.35
UPK3A-202ENST00000396082 MTFR1LQ9H019 292 aa23.48■■□□□ 1.35
UPK3A-202ENST00000396082 NUDCQ9Y266 331 aa23.48■■□□□ 1.35
UPK3A-202ENST00000396082 AKAP4Q5JQC9 854 aa23.47■■□□□ 1.35
UPK3A-202ENST00000396082 LOC102724428A0A0B4J2F2 783 aa23.46■■□□□ 1.35
UPK3A-202ENST00000396082 SIK1P57059 783 aa23.46■■□□□ 1.35
UPK3A-202ENST00000396082 PNPLA7Q6ZV29 1317 aa23.46■■□□□ 1.35
UPK3A-202ENST00000396082 SCN11AQ9UI33 1791 aa23.46■■□□□ 1.35
UPK3A-202ENST00000396082 DDX10Q13206 875 aaKnown RBP23.45■■□□□ 1.34
UPK3A-202ENST00000396082 ATG3Q9NT62 314 aa23.45■■□□□ 1.34
UPK3A-202ENST00000396082 C4BP0C0L5 1744 aa23.45■■□□□ 1.34
UPK3A-202ENST00000396082 MSH5O43196 834 aa23.44■■□□□ 1.34
UPK3A-202ENST00000396082 MTHFSDQ2M296 383 aaKnown RBP23.44■■□□□ 1.34
UPK3A-202ENST00000396082 VIRMAQ69YN4 1812 aaKnown RBP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms