RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 AMPHP49418 695 aa14.03□□□□□ -0.16
CUX1-204ENST00000393824 TBC1D32Q96NH3 1257 aa14.03□□□□□ -0.16
CUX1-204ENST00000393824 TBC1D2Q9BYX2 928 aa14.03□□□□□ -0.16
CUX1-204ENST00000393824 APAF1O14727 1248 aa14.03□□□□□ -0.16
CUX1-204ENST00000393824 ARHGEF25Q86VW2 580 aa14.03□□□□□ -0.16
CUX1-204ENST00000393824 LTV1Q96GA3 475 aaPredicted RBP14.02□□□□□ -0.16
CUX1-204ENST00000393824 RRP7AQ9Y3A4 280 aaKnown RBP14.02□□□□□ -0.16
CUX1-204ENST00000393824 FLT4P35916 1363 aa14.02□□□□□ -0.17
CUX1-204ENST00000393824 ESPNB1AK53 854 aa14.02□□□□□ -0.17
CUX1-204ENST00000393824 UPF2Q9HAU5 1272 aaKnown RBP14.02□□□□□ -0.17
CUX1-204ENST00000393824 PDE4CQ08493 712 aa14.01□□□□□ -0.17
CUX1-204ENST00000393824 CHRNA2Q15822 529 aa14.01□□□□□ -0.17
CUX1-204ENST00000393824 CERKQ8TCT0 537 aa14.01□□□□□ -0.17
CUX1-204ENST00000393824 PLEKHF1Q96S99 279 aa14.01□□□□□ -0.17
CUX1-204ENST00000393824 MYH16Q9H6N6 1097 aa14.01□□□□□ -0.17
CUX1-204ENST00000393824 LTN1O94822 1766 aa14□□□□□ -0.17
CUX1-204ENST00000393824 KCNH5Q8NCM2 988 aa14□□□□□ -0.17
CUX1-204ENST00000393824 PHACTR3Q96KR7 559 aa14□□□□□ -0.17
CUX1-204ENST00000393824 TRAK2O60296 914 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 TOM1O60784 492 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 TPM2P07951 284 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 NEUROD2Q15784 382 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 CRYBG1Q9Y4K1 1723 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 USHBP1Q8N6Y0 703 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 LRRC59Q96AG4 307 aaKnown RBP13.99□□□□□ -0.17
CUX1-204ENST00000393824 PDCL3Q9H2J4 239 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 KIAA0232Q92628 1395 aa13.99□□□□□ -0.17
CUX1-204ENST00000393824 ARHGEF10O15013 1369 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 IP6K1Q92551 441 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 CLUAP1Q96AJ1 413 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 EYA1Q99502 592 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 GRPEL1Q9HAV7 217 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 PHRF1Q9P1Y6 1649 aaKnown RBP13.98□□□□□ -0.17
CUX1-204ENST00000393824 PRKAR2BP31323 418 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 TCP11L2Q8N4U5 519 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 CHMP5Q9NZZ3 219 aa13.98□□□□□ -0.17
CUX1-204ENST00000393824 BCAR3O75815 825 aa13.97□□□□□ -0.17
CUX1-204ENST00000393824 SULT6B1Q6IMI4 303 aa13.97□□□□□ -0.17
CUX1-204ENST00000393824 AHDC1Q5TGY3 1603 aaPredicted RBP13.97□□□□□ -0.17
CUX1-204ENST00000393824 ARXQ96QS3 562 aa13.97□□□□□ -0.17
CUX1-204ENST00000393824 GZF1Q9H116 711 aaPredicted RBP13.97□□□□□ -0.17
CUX1-204ENST00000393824 IQSEC2Q5JU85 1478 aa13.96□□□□□ -0.17
CUX1-204ENST00000393824 NBPF6Q5VWK0 638 aa13.96□□□□□ -0.17
CUX1-204ENST00000393824 RUNDC1Q96C34 613 aa13.96□□□□□ -0.17
CUX1-204ENST00000393824 NBPF4Q96M43 638 aa13.96□□□□□ -0.17
CUX1-204ENST00000393824 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.17
CUX1-204ENST00000393824 ERBB4Q15303 1308 aa13.96□□□□□ -0.18
CUX1-204ENST00000393824 COL16A1Q07092 1604 aaPredicted RBP13.95□□□□□ -0.18
CUX1-204ENST00000393824 RGPD1P0DJD0 1748 aa13.95□□□□□ -0.18
CUX1-204ENST00000393824 RTL1A6NKG5 1358 aa13.94□□□□□ -0.18
CUX1-204ENST00000393824 IGSF1Q8N6C5 1336 aa13.94□□□□□ -0.18
CUX1-204ENST00000393824 DDX11L8A8MPP1 907 aa13.94□□□□□ -0.18
CUX1-204ENST00000393824 FCHSD2O94868 740 aa13.94□□□□□ -0.18
CUX1-204ENST00000393824 KIF24Q5T7B8 1368 aa13.93□□□□□ -0.18
CUX1-204ENST00000393824 RGPD5Q99666 1765 aa13.93□□□□□ -0.18
CUX1-204ENST00000393824 NCBP3Q53F19 620 aaKnown RBP13.93□□□□□ -0.18
CUX1-204ENST00000393824 ANKRD24Q8TF21 1146 aa13.93□□□□□ -0.18
CUX1-204ENST00000393824 ABCA3Q99758 1704 aa13.93□□□□□ -0.18
CUX1-204ENST00000393824 ERBB3P21860 1342 aa13.93□□□□□ -0.18
CUX1-204ENST00000393824 FAM83GA6ND36 823 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 RGPD2P0DJD1 1756 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 COL18A1P39060 1754 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 PHLPP1O60346 1717 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 TMPOP42166 694 aaKnown RBP13.92□□□□□ -0.18
CUX1-204ENST00000393824 TRIM44Q96DX7 344 aaPredicted RBP13.92□□□□□ -0.18
CUX1-204ENST00000393824 PRDM11Q9NQV5 511 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 CPDO75976 1380 aa13.92□□□□□ -0.18
CUX1-204ENST00000393824 KDRP35968 1356 aa13.91□□□□□ -0.18
CUX1-204ENST00000393824 HAP1P54257 671 aaPredicted RBP13.91□□□□□ -0.18
CUX1-204ENST00000393824 WWC1Q8IX03 1113 aa13.91□□□□□ -0.18
CUX1-204ENST00000393824 TRIM35Q9UPQ4 493 aa13.91□□□□□ -0.18
CUX1-204ENST00000393824 CAMTA1Q9Y6Y1 1673 aa13.91□□□□□ -0.18
CUX1-204ENST00000393824 CALD1Q05682 793 aaKnown RBP13.91□□□□□ -0.18
CUX1-204ENST00000393824 PHF23Q9BUL5 403 aaPredicted RBP13.91□□□□□ -0.18
CUX1-204ENST00000393824 THUMPD2Q9BTF0 503 aaKnown RBP13.9□□□□□ -0.18
CUX1-204ENST00000393824 COG6Q9Y2V7 657 aa13.9□□□□□ -0.18
CUX1-204ENST00000393824 ADAMTS2O95450 1211 aa13.89□□□□□ -0.19
CUX1-204ENST00000393824 TERF1P54274 439 aa13.89□□□□□ -0.19
CUX1-204ENST00000393824 PDIA4P13667 645 aaKnown RBP13.89□□□□□ -0.19
CUX1-204ENST00000393824 HSPA1LP34931 641 aa13.89□□□□□ -0.19
CUX1-204ENST00000393824 RIPK4P57078 832 aa13.89□□□□□ -0.19
CUX1-204ENST00000393824 PANK1Q8TE04 598 aa13.89□□□□□ -0.19
CUX1-204ENST00000393824 NUTM2BA6NNL0 878 aaPredicted RBP13.88□□□□□ -0.19
CUX1-204ENST00000393824 NUTM2EB1AL46 878 aaPredicted RBP13.88□□□□□ -0.19
CUX1-204ENST00000393824 DDIT3P35638 169 aa13.88□□□□□ -0.19
CUX1-204ENST00000393824 DCTN1Q14203 1278 aa13.88□□□□□ -0.19
CUX1-204ENST00000393824 NUTM2AQ8IVF1 878 aaPredicted RBP13.88□□□□□ -0.19
CUX1-204ENST00000393824 WDR63Q8IWG1 891 aa13.88□□□□□ -0.19
CUX1-204ENST00000393824 PDZRN3Q9UPQ7 1066 aa13.88□□□□□ -0.19
CUX1-204ENST00000393824 CANXP27824 592 aaKnown RBP13.87□□□□□ -0.19
CUX1-204ENST00000393824 MTHFSDQ2M296 383 aaKnown RBP13.87□□□□□ -0.19
CUX1-204ENST00000393824 SPRYD3Q8NCJ5 442 aa13.87□□□□□ -0.19
CUX1-204ENST00000393824 C22orf23Q9BZE7 217 aa13.87□□□□□ -0.19
CUX1-204ENST00000393824 NLRP2Q9NX02 1062 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 PCDHB15Q9Y5E8 787 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 LMO7Q8WWI1 1683 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 RARSP54136 660 aaKnown RBP13.86□□□□□ -0.19
CUX1-204ENST00000393824 CCDC27Q2M243 656 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 KIAA1211Q6ZU35 1233 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 STRN4Q9NRL3 753 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms