RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 SLC27A3Q5K4L6 730 aa21.78■■□□□ 1.08
CHMP3-202ENST00000393773 TOGARAM1Q9Y4F4 1720 aa21.77■■□□□ 1.08
CHMP3-202ENST00000393773 HOXC9P31274 260 aa21.77■■□□□ 1.08
CHMP3-202ENST00000393773 DDX54Q8TDD1 881 aaKnown RBP21.76■■□□□ 1.07
CHMP3-202ENST00000393773 LTV1Q96GA3 475 aaPredicted RBP21.76■■□□□ 1.07
CHMP3-202ENST00000393773 ITGB4P16144 1822 aa21.74■■□□□ 1.07
CHMP3-202ENST00000393773 SLC16A10Q8TF71 515 aa21.74■■□□□ 1.07
CHMP3-202ENST00000393773 PKD1L3Q7Z443 1732 aa21.74■■□□□ 1.07
CHMP3-202ENST00000393773 ANKRD26Q9UPS8 1709 aa21.73■■□□□ 1.07
CHMP3-202ENST00000393773 COG3Q96JB2 828 aa21.73■■□□□ 1.07
CHMP3-202ENST00000393773 KCNQ4P56696 695 aa21.72■■□□□ 1.07
CHMP3-202ENST00000393773 FBLN1P23142 703 aa21.71■■□□□ 1.07
CHMP3-202ENST00000393773 ST20-MTHFSA0A0A6YYL1 179 aa21.7■■□□□ 1.06
CHMP3-202ENST00000393773 PRIM1P49642 420 aaKnown RBP21.7■■□□□ 1.06
CHMP3-202ENST00000393773 SYTL4Q96C24 671 aaPredicted RBP21.7■■□□□ 1.06
CHMP3-202ENST00000393773 AMPHP49418 695 aa21.69■■□□□ 1.06
CHMP3-202ENST00000393773 POLD1P28340 1107 aa21.68■■□□□ 1.06
CHMP3-202ENST00000393773 ZCRB1Q8TBF4 217 aaKnown RBP21.68■■□□□ 1.06
CHMP3-202ENST00000393773 TFCP2L1Q9NZI6 479 aa21.68■■□□□ 1.06
CHMP3-202ENST00000393773 UBR3Q6ZT12 1888 aa21.68■■□□□ 1.06
CHMP3-202ENST00000393773 SMG6Q86US8 1419 aaKnown RBP21.67■■□□□ 1.06
CHMP3-202ENST00000393773 C4BP0C0L5 1744 aa21.66■■□□□ 1.06
CHMP3-202ENST00000393773 KLHL34Q8N239 644 aa21.66■■□□□ 1.06
CHMP3-202ENST00000393773 NLGN2Q8NFZ4 835 aa21.66■■□□□ 1.06
CHMP3-202ENST00000393773 RRS1Q15050 365 aaKnown RBP21.65■■□□□ 1.06
CHMP3-202ENST00000393773 GPR162Q16538 588 aa21.65■■□□□ 1.06
CHMP3-202ENST00000393773 NBPF6Q5VWK0 638 aa21.65■■□□□ 1.06
CHMP3-202ENST00000393773 NBPF4Q96M43 638 aa21.65■■□□□ 1.06
CHMP3-202ENST00000393773 CCNL1Q9UK58 526 aaPredicted RBP21.65■■□□□ 1.06
CHMP3-202ENST00000393773 MAP2P11137 1827 aaKnown RBP21.64■■□□□ 1.06
CHMP3-202ENST00000393773 USP47Q96K76 1375 aa21.64■■□□□ 1.06
CHMP3-202ENST00000393773 CGNL1Q0VF96 1302 aa21.64■■□□□ 1.05
CHMP3-202ENST00000393773 USHBP1Q8N6Y0 703 aa21.64■■□□□ 1.05
CHMP3-202ENST00000393773 C1QTNF8P60827 252 aa21.63■■□□□ 1.05
CHMP3-202ENST00000393773 INSRP06213 1382 aa21.62■■□□□ 1.05
CHMP3-202ENST00000393773 FYB1O15117 783 aa21.62■■□□□ 1.05
CHMP3-202ENST00000393773 GGNBP2Q9H3C7 697 aa21.62■■□□□ 1.05
CHMP3-202ENST00000393773 CEP350Q5VT06 3117 aa21.62■■□□□ 1.05
CHMP3-202ENST00000393773 NCAPD2Q15021 1401 aa21.62■■□□□ 1.05
CHMP3-202ENST00000393773 FLT4P35916 1363 aa21.61■■□□□ 1.05
CHMP3-202ENST00000393773 SLC24A1O60721 1099 aa21.6■■□□□ 1.05
CHMP3-202ENST00000393773 KIF24Q5T7B8 1368 aa21.6■■□□□ 1.05
CHMP3-202ENST00000393773 PCDH11XQ9BZA7 1347 aa21.59■■□□□ 1.05
CHMP3-202ENST00000393773 PCDH11YQ9BZA8 1340 aa21.59■■□□□ 1.05
CHMP3-202ENST00000393773 SENP3-EIF4A1A0A087X0R7 540 aa21.59■■□□□ 1.05
CHMP3-202ENST00000393773 COL23A1Q86Y22 540 aaPredicted RBP21.59■■□□□ 1.05
CHMP3-202ENST00000393773 YBX3P16989 372 aaKnown RBP eCLIP21.58■■□□□ 1.05
CHMP3-202ENST00000393773 PELP1Q8IZL8 1130 aaKnown RBP21.58■■□□□ 1.05
CHMP3-202ENST00000393773 RAPGEF4Q8WZA2 1011 aa21.58■■□□□ 1.05
CHMP3-202ENST00000393773 PALLDQ8WX93 1383 aa21.58■■□□□ 1.04
CHMP3-202ENST00000393773 TATP17735 454 aaPredicted RBP21.56■■□□□ 1.04
CHMP3-202ENST00000393773 TMF1P82094 1093 aa21.56■■□□□ 1.04
CHMP3-202ENST00000393773 HSP90AB2PQ58FF8 381 aa21.56■■□□□ 1.04
CHMP3-202ENST00000393773 MSL1Q68DK7 614 aa21.55■■□□□ 1.04
CHMP3-202ENST00000393773 GIGYF1O75420 1035 aaPredicted RBP21.54■■□□□ 1.04
CHMP3-202ENST00000393773 NSD3Q9BZ95 1437 aa21.54■■□□□ 1.04
CHMP3-202ENST00000393773 CYP27B1O15528 508 aa21.53■■□□□ 1.04
CHMP3-202ENST00000393773 MSH5O43196 834 aa21.53■■□□□ 1.04
CHMP3-202ENST00000393773 KIF13BQ9NQT8 1826 aa21.51■■□□□ 1.03
CHMP3-202ENST00000393773 KIAA1551Q9HCM1 1747 aa21.51■■□□□ 1.03
CHMP3-202ENST00000393773 AMIGO3Q86WK7 504 aa21.5■■□□□ 1.03
CHMP3-202ENST00000393773 ADCY9O60503 1353 aa21.49■■□□□ 1.03
CHMP3-202ENST00000393773 ATP10DQ9P241 1426 aa21.49■■□□□ 1.03
CHMP3-202ENST00000393773 CICQ96RK0 1608 aaPredicted RBP21.49■■□□□ 1.03
CHMP3-202ENST00000393773 GRIN3BO60391 1043 aa21.49■■□□□ 1.03
CHMP3-202ENST00000393773 EMILIN1Q9Y6C2 1016 aa21.49■■□□□ 1.03
CHMP3-202ENST00000393773 ZNF831Q5JPB2 1677 aa21.49■■□□□ 1.03
CHMP3-202ENST00000393773 MPRIPQ6WCQ1 1025 aa21.48■■□□□ 1.03
CHMP3-202ENST00000393773 FLAD1Q8NFF5 587 aa21.48■■□□□ 1.03
CHMP3-202ENST00000393773 CARD14Q9BXL6 1004 aa21.48■■□□□ 1.03
CHMP3-202ENST00000393773 COL5A3P25940 1745 aaPredicted RBP21.48■■□□□ 1.03
CHMP3-202ENST00000393773 CD2APQ9Y5K6 639 aa21.47■■□□□ 1.03
CHMP3-202ENST00000393773 NKX1-1Q15270 411 aaPredicted RBP21.45■■□□□ 1.02
CHMP3-202ENST00000393773 CDCA8Q53HL2 280 aa21.45■■□□□ 1.02
CHMP3-202ENST00000393773 SMARCC1Q92922 1105 aaPredicted RBP21.45■■□□□ 1.02
CHMP3-202ENST00000393773 HMGB2P26583 209 aaKnown RBP21.44■■□□□ 1.02
CHMP3-202ENST00000393773 PIGBQ92521 554 aa21.44■■□□□ 1.02
CHMP3-202ENST00000393773 AK7Q96M32 723 aa21.44■■□□□ 1.02
CHMP3-202ENST00000393773 C4AP0C0L4 1744 aa21.43■■□□□ 1.02
CHMP3-202ENST00000393773 BRCA1P38398 1863 aaKnown RBP21.42■■□□□ 1.02
CHMP3-202ENST00000393773 N4BP2Q86UW6 1770 aaPredicted RBP21.42■■□□□ 1.02
CHMP3-202ENST00000393773 WASHC2AQ641Q2 1341 aa21.41■■□□□ 1.02
CHMP3-202ENST00000393773 SMIM5Q71RC9 77 aa21.41■■□□□ 1.02
CHMP3-202ENST00000393773 LINC00116Q8NCU8 138 aa21.41■■□□□ 1.02
CHMP3-202ENST00000393773 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.4■■□□□ 1.02
CHMP3-202ENST00000393773 PHF14O94880 888 aa21.4■■□□□ 1.02
CHMP3-202ENST00000393773 KDRP35968 1356 aa21.39■■□□□ 1.02
CHMP3-202ENST00000393773 PLEKHG2Q9H7P9 1386 aa21.39■■□□□ 1.02
CHMP3-202ENST00000393773 IGSF1Q8N6C5 1336 aa21.39■■□□□ 1.01
CHMP3-202ENST00000393773 SSFA2P28290 1259 aa21.39■■□□□ 1.01
CHMP3-202ENST00000393773 SPG7Q9UQ90 795 aa21.39■■□□□ 1.01
CHMP3-202ENST00000393773 LOC102724428A0A0B4J2F2 783 aa21.38■■□□□ 1.01
CHMP3-202ENST00000393773 SIK1P57059 783 aa21.38■■□□□ 1.01
CHMP3-202ENST00000393773 EYA1Q99502 592 aa21.38■■□□□ 1.01
CHMP3-202ENST00000393773 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.37■■□□□ 1.012e-6■■■□□ 16.1
CHMP3-202ENST00000393773 MYH14Q7Z406 1995 aaKnown RBP21.36■■□□□ 1.01
CHMP3-202ENST00000393773 PPM1GO15355 546 aaPredicted RBP21.36■■□□□ 1.01
CHMP3-202ENST00000393773 ITPK1Q13572 414 aa21.36■■□□□ 1.01
CHMP3-202ENST00000393773 PXDNLA1KZ92 1463 aa21.36■■□□□ 1.01
CHMP3-202ENST00000393773 PHKG2P15735 406 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms