RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 PDLIM2Q96JY6 352 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 U2AF1L5P0DN76 240 aaPredicted RBP9.06□□□□□ -0.96
VTI1A-201ENST00000393077 IBSPP21815 317 aaPredicted RBP9.06□□□□□ -0.96
VTI1A-201ENST00000393077 U2AF1Q01081 240 aaKnown RBP eCLIP9.06□□□□□ -0.96
VTI1A-201ENST00000393077 ANKRD45Q5TZF3 282 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 SYT10Q6XYQ8 523 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 PPM1EQ8WY54 764 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 BIRC2Q13490 618 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 MICALL1Q8N3F8 863 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 PSMD1Q99460 953 aa9.06□□□□□ -0.96
VTI1A-201ENST00000393077 IBTKQ9P2D0 1353 aaPredicted RBP9.05□□□□□ -0.96
VTI1A-201ENST00000393077 USP19O94966 1318 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 BECN2A8MW95 431 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 KIF1CO43896 1103 aaKnown RBP9.05□□□□□ -0.96
VTI1A-201ENST00000393077 TICAM2Q86XR7 235 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 ATP6V1DQ9Y5K8 247 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 HCLS1P14317 486 aaPredicted RBP9.05□□□□□ -0.96
VTI1A-201ENST00000393077 TMED8Q6PL24 325 aaPredicted RBP9.05□□□□□ -0.96
VTI1A-201ENST00000393077 HDGFL2Q7Z4V5 671 aaPredicted RBP9.05□□□□□ -0.96
VTI1A-201ENST00000393077 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.05□□□□□ -0.964e-7■■□□□ 14
VTI1A-201ENST00000393077 CHMP3Q9Y3E7 222 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 GBP6Q6ZN66 633 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 FAM107BQ9H098 131 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 CTNNA3Q9UI47 895 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 ADGRL1O94910 1474 aa9.05□□□□□ -0.96
VTI1A-201ENST00000393077 GUCY2CP25092 1073 aa9.04□□□□□ -0.96
VTI1A-201ENST00000393077 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.04□□□□□ -0.96
VTI1A-201ENST00000393077 CXorf56Q9H5V9 222 aa9.04□□□□□ -0.96
VTI1A-201ENST00000393077 CPSF2Q9P2I0 782 aaKnown RBP9.04□□□□□ -0.96
VTI1A-201ENST00000393077 NF2P35240 595 aa9.04□□□□□ -0.96
VTI1A-201ENST00000393077 MAP2K1Q02750 393 aaPredicted RBP9.04□□□□□ -0.96
VTI1A-201ENST00000393077 SUFUQ9UMX1 484 aa9.04□□□□□ -0.96
VTI1A-201ENST00000393077 FANCAO15360 1455 aa9.04□□□□□ -0.96
VTI1A-201ENST00000393077 TCOF1Q13428 1488 aaKnown RBP9.04□□□□□ -0.96
VTI1A-201ENST00000393077 RPRD2Q5VT52 1461 aaKnown RBP9.04□□□□□ -0.96
VTI1A-201ENST00000393077 CCDC192P0DO97 292 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 CAPN2P17655 700 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 ZKSCAN2Q63HK3 967 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 NEBLO76041 1014 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 SLU7O95391 586 aaKnown RBP9.03□□□□□ -0.96
VTI1A-201ENST00000393077 FAM212AQ96EL1 285 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 RRP15Q9Y3B9 282 aaKnown RBP9.03□□□□□ -0.96
VTI1A-201ENST00000393077 MORC2Q9Y6X9 1032 aaPredicted RBP9.03□□□□□ -0.96
VTI1A-201ENST00000393077 REC8O95072 547 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 MMP14P50281 582 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 DDX11Q96FC9 970 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 GAS2L2Q8NHY3 880 aa9.03□□□□□ -0.96
VTI1A-201ENST00000393077 PLCH2O75038 1416 aa9.02□□□□□ -0.96
VTI1A-201ENST00000393077 EIF3JO75822 258 aaKnown RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 NCBP1Q09161 790 aaKnown RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 ELF2Q15723 593 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 TERF2IPQ9NYB0 399 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 ASXL2Q76L83 1435 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 TRAPPC8Q9Y2L5 1435 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 IPO8O15397 1037 aaKnown RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 CDR1P51861 262 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 DUSP27Q5VZP5 1158 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 SLC52A1Q9NWF4 448 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 RRP7AQ9Y3A4 280 aaKnown RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 SYCP2Q9BX26 1530 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 BRPF1P55201 1214 aaPredicted RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 CCDC183Q5T5S1 534 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 DZIP1LQ8IYY4 767 aaKnown RBP9.02□□□□□ -0.97
VTI1A-201ENST00000393077 ERO1AQ96HE7 468 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 EID1Q9Y6B2 187 aa9.02□□□□□ -0.97
VTI1A-201ENST00000393077 PRR29P0C7W0 189 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 CCDC186Q7Z3E2 898 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 CENPHQ9H3R5 247 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 CABP2Q9NPB3 220 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 LMBRD1Q9NUN5 540 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 TRMT1Q9NXH9 659 aaKnown RBP9.01□□□□□ -0.97
VTI1A-201ENST00000393077 FBXO3Q9UK99 471 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 EVC2Q86UK5 1308 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 TRIM66O15016 1216 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 CDC45O75419 566 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 KIAA0754O94854 1291 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 GYS2P54840 703 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 SYCP1Q15431 976 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 AP1ARQ63HQ0 302 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 ANKRD7Q92527 254 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 DDX19BQ9UMR2 479 aa9.01□□□□□ -0.97
VTI1A-201ENST00000393077 LRPPRCP42704 1394 aaKnown RBP9.01□□□□□ -0.97
VTI1A-201ENST00000393077 TMEM63CQ9P1W3 806 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 FIBPO43427 364 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 CALR3Q96L12 384 aaKnown RBP9□□□□□ -0.97
VTI1A-201ENST00000393077 APBB1O00213 710 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 PTGS1P23219 599 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 MCTP2Q6DN12 878 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 CCDC102AQ96A19 550 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 SLC12A5Q9H2X9 1139 aa9□□□□□ -0.97
VTI1A-201ENST00000393077 SLFN5Q08AF3 891 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 ARHGAP29Q52LW3 1261 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 FMNL3Q8IVF7 1028 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 CCDC196A0A1B0GTZ2 297 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 KDM4AO75164 1064 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 CYP2C19P33261 490 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 PSEN1P49768 467 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 GOLGA5Q8TBA6 731 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 DONSONQ9NYP3 566 aa8.99□□□□□ -0.97
VTI1A-201ENST00000393077 PLEKHH1Q9ULM0 1364 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms