RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 LMOD2Q6P5Q4 547 aa32.19■■■□□ 2.74
SHOX2-201ENST00000389589 ARHGEF25Q86VW2 580 aa32.19■■■□□ 2.74
SHOX2-201ENST00000389589 KIAA0232Q92628 1395 aa32.18■■■□□ 2.74
SHOX2-201ENST00000389589 MRPL50Q8N5N7 158 aaKnown RBP32.18■■■□□ 2.74
SHOX2-201ENST00000389589 C8orf58Q8NAV2 365 aa32.18■■■□□ 2.74
SHOX2-201ENST00000389589 ARHGAP45Q92619 1136 aa32.18■■■□□ 2.74
SHOX2-201ENST00000389589 DDX19BQ9UMR2 479 aa32.18■■■□□ 2.74
SHOX2-201ENST00000389589 LRRC37A3O60309 1634 aa32.17■■■□□ 2.74
SHOX2-201ENST00000389589 RGPD2P0DJD1 1756 aa32.15■■■□□ 2.74
SHOX2-201ENST00000389589 NPHP3Q7Z494 1330 aa32.14■■■□□ 2.74
SHOX2-201ENST00000389589 GNAT3A8MTJ3 354 aa32.14■■■□□ 2.74
SHOX2-201ENST00000389589 IGHDP01880 384 aa32.14■■■□□ 2.74
SHOX2-201ENST00000389589 ELL2O00472 640 aaPredicted RBP32.13■■■□□ 2.73
SHOX2-201ENST00000389589 ZBTB7CA1YPR0 619 aa32.12■■■□□ 2.73
SHOX2-201ENST00000389589 MAP3K5Q99683 1374 aa32.12■■■□□ 2.73
SHOX2-201ENST00000389589 ITPRIPQ8IWB1 547 aa32.11■■■□□ 2.73
SHOX2-201ENST00000389589 NBPF6Q5VWK0 638 aa32.11■■■□□ 2.73
SHOX2-201ENST00000389589 NBPF4Q96M43 638 aa32.11■■■□□ 2.73
SHOX2-201ENST00000389589 PCDHB15Q9Y5E8 787 aa32.1■■■□□ 2.73
SHOX2-201ENST00000389589 MED1Q15648 1581 aaPredicted RBP32.1■■■□□ 2.73
SHOX2-201ENST00000389589 TMEM57Q8N5G2 664 aa32.09■■■□□ 2.73
SHOX2-201ENST00000389589 CAMTA1Q9Y6Y1 1673 aa32.09■■■□□ 2.73
SHOX2-201ENST00000389589 USHBP1Q8N6Y0 703 aa32.08■■■□□ 2.73
SHOX2-201ENST00000389589 RWDD1Q9H446 243 aaPredicted RBP32.08■■■□□ 2.73
SHOX2-201ENST00000389589 NCAPD2Q15021 1401 aa32.08■■■□□ 2.73
SHOX2-201ENST00000389589 TSPYL4Q9UJ04 414 aa32.06■■■□□ 2.72
SHOX2-201ENST00000389589 TNS3Q68CZ2 1445 aa32.06■■■□□ 2.72
SHOX2-201ENST00000389589 RGPD5Q99666 1765 aa32.06■■■□□ 2.72
SHOX2-201ENST00000389589 CHMP4BQ9H444 224 aaKnown RBP32.06■■■□□ 2.72
SHOX2-201ENST00000389589 PXDNQ92626 1479 aa32.05■■■□□ 2.72
SHOX2-201ENST00000389589 BABAM1Q9NWV8 329 aa32.04■■■□□ 2.72
SHOX2-201ENST00000389589 API5Q9BZZ5 524 aaKnown RBP32.04■■■□□ 2.72
SHOX2-201ENST00000389589 PDE4AP27815 886 aa32.03■■■□□ 2.72
SHOX2-201ENST00000389589 ANKRD24Q8TF21 1146 aa32.03■■■□□ 2.72
SHOX2-201ENST00000389589 SKAP1Q86WV1 359 aa32.03■■■□□ 2.72
SHOX2-201ENST00000389589 LMO7Q8WWI1 1683 aa32.02■■■□□ 2.72
SHOX2-201ENST00000389589 PLEKHG5O94827 1062 aa32.01■■■□□ 2.72
SHOX2-201ENST00000389589 ABCC4O15439 1325 aa32.01■■■□□ 2.72
SHOX2-201ENST00000389589 DDX17Q92841 729 aaKnown RBP32.01■■■□□ 2.71
SHOX2-201ENST00000389589 BACH2Q9BYV9 841 aa32.01■■■□□ 2.71
SHOX2-201ENST00000389589 ZBTB40Q9NUA8 1239 aa32.01■■■□□ 2.71
SHOX2-201ENST00000389589 LRRC59Q96AG4 307 aaKnown RBP32■■■□□ 2.71
SHOX2-201ENST00000389589 CRYBG1Q9Y4K1 1723 aa32■■■□□ 2.71
SHOX2-201ENST00000389589 ABCC6O95255 1503 aa31.99■■■□□ 2.71
SHOX2-201ENST00000389589 IL17REQ8NFR9 667 aa31.99■■■□□ 2.71
SHOX2-201ENST00000389589 ZNF335Q9H4Z2 1342 aaPredicted RBP31.99■■■□□ 2.71
SHOX2-201ENST00000389589 KRT24Q2M2I5 525 aa31.98■■■□□ 2.71
SHOX2-201ENST00000389589 MIS18AQ9NYP9 233 aa31.98■■■□□ 2.71
SHOX2-201ENST00000389589 AMOTQ4VCS5 1084 aa31.98■■■□□ 2.71
SHOX2-201ENST00000389589 PLEKHO1Q53GL0 409 aaPredicted RBP31.98■■■□□ 2.71
SHOX2-201ENST00000389589 SPATA31A3Q5VYP0 1347 aa31.98■■■□□ 2.71
SHOX2-201ENST00000389589 HDAC1Q13547 482 aaPredicted RBP31.97■■■□□ 2.71
SHOX2-201ENST00000389589 COL18A1P39060 1754 aa31.96■■■□□ 2.71
SHOX2-201ENST00000389589 SOS1Q07889 1333 aaPredicted RBP31.96■■■□□ 2.71
SHOX2-201ENST00000389589 TAF7Q15545 349 aaPredicted RBP31.96■■■□□ 2.71
SHOX2-201ENST00000389589 AXIN2Q9Y2T1 843 aa31.96■■■□□ 2.71
SHOX2-201ENST00000389589 BRINP3Q76B58 766 aa31.96■■■□□ 2.71
SHOX2-201ENST00000389589 CACNA1FO60840 1977 aa31.96■■■□□ 2.71
SHOX2-201ENST00000389589 CEMIPQ8WUJ3 1361 aa31.95■■■□□ 2.71
SHOX2-201ENST00000389589 ZC3H6P61129 1189 aaKnown RBP31.95■■■□□ 2.71
SHOX2-201ENST00000389589 FAM208AQ9UK61 1670 aaKnown RBP31.94■■■□□ 2.7
SHOX2-201ENST00000389589 ERBB3P21860 1342 aa31.93■■■□□ 2.7
SHOX2-201ENST00000389589 VIRMAQ69YN4 1812 aaKnown RBP31.93■■■□□ 2.7
SHOX2-201ENST00000389589 RGS3P49796 1198 aa31.93■■■□□ 2.7
SHOX2-201ENST00000389589 PTPRCP08575 1304 aa31.93■■■□□ 2.7
SHOX2-201ENST00000389589 AKAP4Q5JQC9 854 aa31.93■■■□□ 2.7
SHOX2-201ENST00000389589 ZBTB7BO15156 539 aaPredicted RBP31.91■■■□□ 2.7
SHOX2-201ENST00000389589 SLAIN2Q9P270 581 aa31.91■■■□□ 2.7
SHOX2-201ENST00000389589 ZNF530Q6P9A1 599 aaPredicted RBP31.9■■■□□ 2.7
SHOX2-201ENST00000389589 OVOS2A0A0G2JMS6 1433 aa31.88■■■□□ 2.69
SHOX2-201ENST00000389589 CPDO75976 1380 aa31.87■■■□□ 2.69
SHOX2-201ENST00000389589 KDM3BQ7LBC6 1761 aa31.87■■■□□ 2.69
SHOX2-201ENST00000389589 FAM161AQ3B820 660 aa31.87■■■□□ 2.69
SHOX2-201ENST00000389589 RGS12O14924 1447 aa31.85■■■□□ 2.69
SHOX2-201ENST00000389589 SLC4A2P04920 1241 aa31.85■■■□□ 2.69
SHOX2-201ENST00000389589 C1orf141Q5JVX7 400 aa31.85■■■□□ 2.69
SHOX2-201ENST00000389589 INTS3Q68E01 1043 aaKnown RBP31.85■■■□□ 2.69
SHOX2-201ENST00000389589 PDZRN3Q9UPQ7 1066 aa31.85■■■□□ 2.69
SHOX2-201ENST00000389589 SOS2Q07890 1332 aaPredicted RBP31.85■■■□□ 2.69
SHOX2-201ENST00000389589 ANP32AP39687 249 aaKnown RBP31.84■■■□□ 2.69
SHOX2-201ENST00000389589 CABLES1Q8TDN4 633 aa31.84■■■□□ 2.69
SHOX2-201ENST00000389589 STK31Q9BXU1 1019 aa31.84■■■□□ 2.69
SHOX2-201ENST00000389589 CCDC30Q5VVM6 783 aa31.83■■■□□ 2.69
SHOX2-201ENST00000389589 PLEKHG2Q9H7P9 1386 aa31.83■■■□□ 2.69
SHOX2-201ENST00000389589 LGR6Q9HBX8 967 aa31.82■■■□□ 2.68
SHOX2-201ENST00000389589 SMC5Q8IY18 1101 aa31.81■■■□□ 2.68
SHOX2-201ENST00000389589 TEFQ10587 303 aa31.8■■■□□ 2.68
SHOX2-201ENST00000389589 ADAMTS7Q9UKP4 1686 aa31.8■■■□□ 2.68
SHOX2-201ENST00000389589 NLRP2Q9NX02 1062 aa31.79■■■□□ 2.68
SHOX2-201ENST00000389589 RAPGEF4Q8WZA2 1011 aa31.79■■■□□ 2.68
SHOX2-201ENST00000389589 CHMP4AQ9BY43 222 aa31.79■■■□□ 2.68
SHOX2-201ENST00000389589 NHSL1Q5SYE7 1610 aa31.78■■■□□ 2.68
SHOX2-201ENST00000389589 RNMTO43148 476 aaKnown RBP31.78■■■□□ 2.68
SHOX2-201ENST00000389589 C8orf34Q49A92 452 aa31.77■■■□□ 2.68
SHOX2-201ENST00000389589 SIPA1L3O60292 1781 aaPredicted RBP31.77■■■□□ 2.68
SHOX2-201ENST00000389589 MPRIPQ6WCQ1 1025 aa31.76■■■□□ 2.68
SHOX2-201ENST00000389589 HOXB7P09629 217 aa31.76■■■□□ 2.67
SHOX2-201ENST00000389589 CSB-PGBD3P0DP91 1061 aa31.75■■■□□ 2.67
SHOX2-201ENST00000389589 TATP17735 454 aaPredicted RBP31.74■■■□□ 2.67
SHOX2-201ENST00000389589 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.74■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms