RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 IGHDP01880 384 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 TSPYL6Q8N831 410 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 PLEKHG3A1L390 1219 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 GOLGA6L3A6NEY3 463 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 G3V3G9 751 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 DCAF8Q5TAQ9 597 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 CNTROBQ8N137 903 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 DBF4Q9UBU7 674 aaPredicted RBP17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 ZFYVE9O95405 1425 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 IFNL2Q8IZJ0 200 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 PLXNC1O60486 1568 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 KRT24Q2M2I5 525 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 SIRT1Q96EB6 747 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 FSD1Q9BTV5 496 aa17.25■□□□□ 0.35
SHROOM1-203ENST00000378679 APPP05067 770 aa17.24■□□□□ 0.35
SHROOM1-203ENST00000378679 IL13P35225 146 aa17.24■□□□□ 0.35
SHROOM1-203ENST00000378679 PTMSP20962 102 aa17.24■□□□□ 0.35
SHROOM1-203ENST00000378679 ERC1Q8IUD2 1116 aa17.24■□□□□ 0.35
SHROOM1-203ENST00000378679 PCDHB15Q9Y5E8 787 aa17.24■□□□□ 0.35
SHROOM1-203ENST00000378679 RNF20Q5VTR2 975 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 CHMP5Q9NZZ3 219 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 VPS37DQ86XT2 251 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 DNAAF4Q8WXU2 420 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 ERVK-7P63135 1459 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 LRRIQ1Q96JM4 1722 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 CDC42BPBQ9Y5S2 1711 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 HOXC9P31274 260 aa17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 HSP90AA2PQ14568 343 aaPredicted RBP17.23■□□□□ 0.35
SHROOM1-203ENST00000378679 KDM5CP41229 1560 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 MYOM2P54296 1465 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 VAMP4O75379 141 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 RLBP1P12271 317 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 TMOD3Q9NYL9 352 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 ABCC3O15438 1527 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 PTPRCP08575 1304 aa17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 SMARCA5O60264 1052 aaPredicted RBP17.22■□□□□ 0.35
SHROOM1-203ENST00000378679 LARP1Q6PKG0 1096 aaKnown RBP17.21■□□□□ 0.35
SHROOM1-203ENST00000378679 PI4KAP2A4QPH2 592 aa17.21■□□□□ 0.35
SHROOM1-203ENST00000378679 PI4KAP1Q8N8J0 262 aa17.21■□□□□ 0.35
SHROOM1-203ENST00000378679 DNAJC2Q99543 621 aaKnown RBP17.21■□□□□ 0.35
SHROOM1-203ENST00000378679 WASHC4Q2M389 1173 aa17.2■□□□□ 0.34
SHROOM1-203ENST00000378679 IP6K1Q92551 441 aa17.2■□□□□ 0.34
SHROOM1-203ENST00000378679 ARHGAP45Q92619 1136 aa17.2■□□□□ 0.34
SHROOM1-203ENST00000378679 LRRFIP2Q9Y608 721 aaKnown RBP17.2■□□□□ 0.34
SHROOM1-203ENST00000378679 MAP4K4O95819 1239 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 NEK4P51957 841 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 FMNL2Q96PY5 1086 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 STARD3NLO95772 234 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 KIF3AQ9Y496 699 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 CCDC85AQ96PX6 553 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 TRIM35Q9UPQ4 493 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 EFCAB6Q5THR3 1501 aa17.19■□□□□ 0.34
SHROOM1-203ENST00000378679 DDX49Q9Y6V7 483 aaKnown RBP17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 HTATSF1O43719 755 aaKnown RBP17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 SLC39A6Q13433 755 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 AACSQ86V21 672 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 IQGAP3Q86VI3 1631 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 FAM184AQ8NB25 1140 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 MYD88Q99836 296 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 DDX11L8A8MPP1 907 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 MRPL50Q8N5N7 158 aaKnown RBP17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 HYPKQ9NX55 129 aa17.18■□□□□ 0.34
SHROOM1-203ENST00000378679 ARHGAP31Q2M1Z3 1444 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 EXOC5O00471 708 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 CCDC57Q2TAC2 916 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 NUTM1Q86Y26 1132 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 SYAP1Q96A49 352 aaPredicted RBP17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 MEIS3Q99687 375 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 CNNM1Q9NRU3 951 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 AKAP4Q5JQC9 854 aa17.17■□□□□ 0.34
SHROOM1-203ENST00000378679 MSNP26038 577 aaKnown RBP17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 TET3O43151 1660 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 KAT6BQ8WYB5 2073 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 NGLY1Q96IV0 654 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 H3BQV1 296 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 IFFO2Q5TF58 517 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 KIF1BPQ96EK5 621 aa17.16■□□□□ 0.34
SHROOM1-203ENST00000378679 ABCA9Q8IUA7 1624 aa17.15■□□□□ 0.34
SHROOM1-203ENST00000378679 TRDNQ13061 729 aa17.15■□□□□ 0.34
SHROOM1-203ENST00000378679 DDX17Q92841 729 aaKnown RBP17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 CHPF2Q9P2E5 772 aa17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 CEP126Q9P2H0 1117 aa17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 MAP3K2Q9Y2U5 619 aa17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 ROBO2Q9HCK4 1378 aa17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 ZCRB1Q8TBF4 217 aaKnown RBP17.14■□□□□ 0.33
SHROOM1-203ENST00000378679 SBNO1A3KN83 1393 aa17.13■□□□□ 0.33
SHROOM1-203ENST00000378679 PLEKHG1Q9ULL1 1385 aa17.13■□□□□ 0.33
SHROOM1-203ENST00000378679 RABEP1Q15276 862 aa17.13■□□□□ 0.33
SHROOM1-203ENST00000378679 ZBTB3Q9H5J0 574 aa17.13■□□□□ 0.33
SHROOM1-203ENST00000378679 ATP6V1DQ9Y5K8 247 aa17.13■□□□□ 0.33
SHROOM1-203ENST00000378679 SNRPA1P09661 255 aaKnown RBP17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 MX1P20591 662 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 PIK3R4Q99570 1358 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 A0A087WZG4 1122 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 SMC3Q9UQE7 1217 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 ATP5J2-PTCD1G3V325 749 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 CSPP1Q1MSJ5 1256 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 NFATC2IPQ8NCF5 419 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 UNC13BO14795 1591 aa17.12■□□□□ 0.33
SHROOM1-203ENST00000378679 CPLX2Q6PUV4 134 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms