RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 MTHFSDQ2M296 383 aaKnown RBP25.54■■□□□ 1.68
VSX1-202ENST00000376709 ORAI2Q96SN7 254 aa25.54■■□□□ 1.68
VSX1-202ENST00000376709 KIF24Q5T7B8 1368 aa25.54■■□□□ 1.68
VSX1-202ENST00000376709 SEC24BO95487 1268 aa25.53■■□□□ 1.68
VSX1-202ENST00000376709 FOXO3O43524 673 aa25.52■■□□□ 1.68
VSX1-202ENST00000376709 KIAA0232Q92628 1395 aa25.52■■□□□ 1.68
VSX1-202ENST00000376709 CRB1P82279 1406 aa25.51■■□□□ 1.67
VSX1-202ENST00000376709 KRT24Q2M2I5 525 aa25.51■■□□□ 1.67
VSX1-202ENST00000376709 GAS2L2Q8NHY3 880 aa25.51■■□□□ 1.67
VSX1-202ENST00000376709 SLC4A3P48751 1232 aa25.5■■□□□ 1.67
VSX1-202ENST00000376709 UPF2Q9HAU5 1272 aaKnown RBP25.5■■□□□ 1.67
VSX1-202ENST00000376709 USP19O94966 1318 aa25.5■■□□□ 1.67
VSX1-202ENST00000376709 XPCQ01831 940 aaPredicted RBP25.49■■□□□ 1.67
VSX1-202ENST00000376709 C1orf115Q9H7X2 142 aa25.49■■□□□ 1.67
VSX1-202ENST00000376709 LTV1Q96GA3 475 aaPredicted RBP25.48■■□□□ 1.67
VSX1-202ENST00000376709 RTL5Q5HYW3 569 aaPredicted RBP25.48■■□□□ 1.67
VSX1-202ENST00000376709 NFAT5O94916 1531 aa25.47■■□□□ 1.67
VSX1-202ENST00000376709 NUCB1Q02818 461 aa25.46■■□□□ 1.67
VSX1-202ENST00000376709 LTN1O94822 1766 aa25.46■■□□□ 1.67
VSX1-202ENST00000376709 MIS18AQ9NYP9 233 aa25.46■■□□□ 1.67
VSX1-202ENST00000376709 TSPYL4Q9UJ04 414 aa25.46■■□□□ 1.67
VSX1-202ENST00000376709 RTL1A6NKG5 1358 aa25.45■■□□□ 1.66
VSX1-202ENST00000376709 HSPA2P54652 639 aa25.44■■□□□ 1.66
VSX1-202ENST00000376709 C19orf44Q9H6X5 657 aa25.44■■□□□ 1.66
VSX1-202ENST00000376709 C1orf167Q5SNV9 1468 aa25.43■■□□□ 1.66
VSX1-202ENST00000376709 CHD1LQ86WJ1 897 aa25.43■■□□□ 1.66
VSX1-202ENST00000376709 GCC1Q96CN9 775 aa25.43■■□□□ 1.66
VSX1-202ENST00000376709 LNPKQ9C0E8 428 aa25.43■■□□□ 1.66
VSX1-202ENST00000376709 ZBTB7CA1YPR0 619 aa25.42■■□□□ 1.66
VSX1-202ENST00000376709 PLEKHG5O94827 1062 aa25.42■■□□□ 1.66
VSX1-202ENST00000376709 STRCP1A6NGW2 1772 aa25.42■■□□□ 1.66
VSX1-202ENST00000376709 HTATSF1O43719 755 aaKnown RBP25.41■■□□□ 1.66
VSX1-202ENST00000376709 IP6K1Q92551 441 aa25.41■■□□□ 1.66
VSX1-202ENST00000376709 PTPRCP08575 1304 aa25.41■■□□□ 1.66
VSX1-202ENST00000376709 GNAT3A8MTJ3 354 aa25.41■■□□□ 1.66
VSX1-202ENST00000376709 TMEM94Q12767 1356 aa25.4■■□□□ 1.66
VSX1-202ENST00000376709 DEKP35659 375 aaKnown RBP25.4■■□□□ 1.66
VSX1-202ENST00000376709 INTS3Q68E01 1043 aaKnown RBP25.4■■□□□ 1.66
VSX1-202ENST00000376709 KCNH5Q8NCM2 988 aa25.4■■□□□ 1.66
VSX1-202ENST00000376709 LMOD2Q6P5Q4 547 aa25.39■■□□□ 1.66
VSX1-202ENST00000376709 USHBP1Q8N6Y0 703 aa25.39■■□□□ 1.66
VSX1-202ENST00000376709 ANKRD45Q5TZF3 282 aa25.39■■□□□ 1.65
VSX1-202ENST00000376709 RGS12O14924 1447 aa25.39■■□□□ 1.65
VSX1-202ENST00000376709 SLC4A2P04920 1241 aa25.38■■□□□ 1.65
VSX1-202ENST00000376709 SIRT2Q8IXJ6 389 aa25.38■■□□□ 1.65
VSX1-202ENST00000376709 KRT28Q7Z3Y7 464 aa25.38■■□□□ 1.65
VSX1-202ENST00000376709 TBC1D32Q96NH3 1257 aa25.38■■□□□ 1.65
VSX1-202ENST00000376709 LRRC37A3O60309 1634 aa25.38■■□□□ 1.65
VSX1-202ENST00000376709 TRPM3Q9HCF6 1732 aaPredicted RBP25.37■■□□□ 1.65
VSX1-202ENST00000376709 KIF1AQ12756 1690 aa25.37■■□□□ 1.65
VSX1-202ENST00000376709 MAP3K5Q99683 1374 aa25.36■■□□□ 1.65
VSX1-202ENST00000376709 ATF3P18847 181 aa25.35■■□□□ 1.65
VSX1-202ENST00000376709 GCP02774 474 aa25.35■■□□□ 1.65
VSX1-202ENST00000376709 BECN1Q14457 450 aa25.35■■□□□ 1.65
VSX1-202ENST00000376709 SLIT3O75094 1523 aa25.34■■□□□ 1.65
VSX1-202ENST00000376709 MST1RQ04912 1400 aa25.34■■□□□ 1.65
VSX1-202ENST00000376709 MSH6P52701 1360 aa25.33■■□□□ 1.65
VSX1-202ENST00000376709 PHRF1Q9P1Y6 1649 aaKnown RBP25.32■■□□□ 1.64
VSX1-202ENST00000376709 NBPF6Q5VWK0 638 aa25.32■■□□□ 1.64
VSX1-202ENST00000376709 NBPF4Q96M43 638 aa25.32■■□□□ 1.64
VSX1-202ENST00000376709 USP35Q9P2H5 1018 aa25.32■■□□□ 1.64
VSX1-202ENST00000376709 MFAP1P55081 439 aaKnown RBP25.32■■□□□ 1.64
VSX1-202ENST00000376709 STK31Q9BXU1 1019 aa25.31■■□□□ 1.64
VSX1-202ENST00000376709 ARHGEF25Q86VW2 580 aa25.31■■□□□ 1.64
VSX1-202ENST00000376709 IL17REQ8NFR9 667 aa25.3■■□□□ 1.64
VSX1-202ENST00000376709 DDX17Q92841 729 aaKnown RBP25.29■■□□□ 1.64
VSX1-202ENST00000376709 DCCP43146 1447 aa25.29■■□□□ 1.64
VSX1-202ENST00000376709 LRRC59Q96AG4 307 aaKnown RBP25.29■■□□□ 1.64
VSX1-202ENST00000376709 TAF7Q15545 349 aaPredicted RBP25.28■■□□□ 1.64
VSX1-202ENST00000376709 BMP2KLQ5H9B9 411 aa25.28■■□□□ 1.64
VSX1-202ENST00000376709 G2E3Q7L622 706 aa25.28■■□□□ 1.64
VSX1-202ENST00000376709 C22orf23Q9BZE7 217 aa25.28■■□□□ 1.64
VSX1-202ENST00000376709 NCOA3Q9Y6Q9 1424 aa25.28■■□□□ 1.64
VSX1-202ENST00000376709 RGPD2P0DJD1 1756 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 KDM4FA0A1W2PPD8 638 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 SLC4A10Q6U841 1118 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 ATP10DQ9P241 1426 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 CCDC30Q5VVM6 783 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 RPAP2Q8IXW5 612 aaPredicted RBP25.27■■□□□ 1.64
VSX1-202ENST00000376709 ANKRD44Q8N8A2 993 aa25.27■■□□□ 1.64
VSX1-202ENST00000376709 MEIS3Q99687 375 aa25.26■■□□□ 1.63
VSX1-202ENST00000376709 BABAM1Q9NWV8 329 aa25.26■■□□□ 1.63
VSX1-202ENST00000376709 DCTPP1Q9H773 170 aa25.25■■□□□ 1.63
VSX1-202ENST00000376709 ALS2Q96Q42 1657 aa25.25■■□□□ 1.63
VSX1-202ENST00000376709 FAM208AQ9UK61 1670 aaKnown RBP25.25■■□□□ 1.63
VSX1-202ENST00000376709 F6X3S4 739 aa25.24■■□□□ 1.63
VSX1-202ENST00000376709 CCT4P50991 539 aaKnown RBP25.24■■□□□ 1.63
VSX1-202ENST00000376709 CEP85Q6P2H3 762 aa25.24■■□□□ 1.63
VSX1-202ENST00000376709 LMTK3Q96Q04 1460 aa25.24■■□□□ 1.63
VSX1-202ENST00000376709 CADPS2Q86UW7 1296 aa25.24■■□□□ 1.63
VSX1-202ENST00000376709 SOS1Q07889 1333 aaPredicted RBP25.23■■□□□ 1.63
VSX1-202ENST00000376709 ANKRD24Q8TF21 1146 aa25.22■■□□□ 1.63
VSX1-202ENST00000376709 NECTIN2Q92692 538 aa25.22■■□□□ 1.63
VSX1-202ENST00000376709 NFKBIBQ15653 356 aa25.22■■□□□ 1.63
VSX1-202ENST00000376709 AXIN2Q9Y2T1 843 aa25.22■■□□□ 1.63
VSX1-202ENST00000376709 MED1Q15648 1581 aaPredicted RBP25.22■■□□□ 1.63
VSX1-202ENST00000376709 FLIIQ13045 1269 aa25.21■■□□□ 1.63
VSX1-202ENST00000376709 CACNA1FO60840 1977 aa25.21■■□□□ 1.63
VSX1-202ENST00000376709 FKBP5Q13451 457 aaPredicted RBP25.21■■□□□ 1.63
VSX1-202ENST00000376709 ZC3H6P61129 1189 aaKnown RBP25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms