RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 OVOS2A0A0J9YW53 1432 aa13.8□□□□□ -0.2
CCDC40-203ENST00000374877 OVOS2Q6IE36 1432 aa13.8□□□□□ -0.2
CCDC40-203ENST00000374877 NME9Q86XW9 330 aa13.8□□□□□ -0.2
CCDC40-203ENST00000374877 RBM33Q96EV2 1170 aaKnown RBP13.8□□□□□ -0.2
CCDC40-203ENST00000374877 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
CCDC40-203ENST00000374877 CD2BP2O95400 341 aaKnown RBP13.79□□□□□ -0.2
CCDC40-203ENST00000374877 COG3Q96JB2 828 aa13.79□□□□□ -0.2
CCDC40-203ENST00000374877 KIF1AQ12756 1690 aa13.79□□□□□ -0.2
CCDC40-203ENST00000374877 C1orf167Q5SNV9 1468 aa13.79□□□□□ -0.2
CCDC40-203ENST00000374877 BMP2KLQ5H9B9 411 aa13.79□□□□□ -0.2
CCDC40-203ENST00000374877 SKOR2Q2VWA4 1001 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-203ENST00000374877 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
CCDC40-203ENST00000374877 USP54Q70EL1 1684 aa13.78□□□□□ -0.2
CCDC40-203ENST00000374877 MSH6P52701 1360 aa13.78□□□□□ -0.2
CCDC40-203ENST00000374877 MST1RQ04912 1400 aa13.78□□□□□ -0.2
CCDC40-203ENST00000374877 IL16Q14005 1332 aa13.77□□□□□ -0.2
CCDC40-203ENST00000374877 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.2
CCDC40-203ENST00000374877 K7ELQ4 463 aaPredicted RBP13.77□□□□□ -0.21
CCDC40-203ENST00000374877 ATF3P18847 181 aa13.77□□□□□ -0.21
CCDC40-203ENST00000374877 CADPS2Q86UW7 1296 aa13.77□□□□□ -0.21
CCDC40-203ENST00000374877 KIF2CQ99661 725 aa13.77□□□□□ -0.21
CCDC40-203ENST00000374877 SSFA2P28290 1259 aa13.77□□□□□ -0.21
CCDC40-203ENST00000374877 COL3A1P02461 1466 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-203ENST00000374877 GOLGA6L22H0YM25 854 aa13.76□□□□□ -0.21
CCDC40-203ENST00000374877 TBC1D9Q6ZT07 1266 aa13.76□□□□□ -0.21
CCDC40-203ENST00000374877 DIAPH1O60610 1272 aaKnown RBP13.76□□□□□ -0.21
CCDC40-203ENST00000374877 ESCO1Q5FWF5 840 aa13.76□□□□□ -0.21
CCDC40-203ENST00000374877 ZNF335Q9H4Z2 1342 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-203ENST00000374877 RRP9O43818 475 aaKnown RBP13.75□□□□□ -0.21
CCDC40-203ENST00000374877 PTMSP20962 102 aa13.75□□□□□ -0.21
CCDC40-203ENST00000374877 VSIG10Q8N0Z9 540 aa13.75□□□□□ -0.21
CCDC40-203ENST00000374877 ALDH1L2Q3SY69 923 aa13.75□□□□□ -0.21
CCDC40-203ENST00000374877 XIRP1Q702N8 1843 aaKnown RBP13.75□□□□□ -0.21
CCDC40-203ENST00000374877 GAS2L2Q8NHY3 880 aa13.74□□□□□ -0.21
CCDC40-203ENST00000374877 DDX49Q9Y6V7 483 aaKnown RBP13.74□□□□□ -0.21
CCDC40-203ENST00000374877 CDK12Q9NYV4 1490 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-203ENST00000374877 PIK3C2AO00443 1686 aa13.74□□□□□ -0.21
CCDC40-203ENST00000374877 ELL2O00472 640 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-203ENST00000374877 ANP32BQ92688 251 aaKnown RBP13.74□□□□□ -0.21
CCDC40-203ENST00000374877 GCC1Q96CN9 775 aa13.74□□□□□ -0.21
CCDC40-203ENST00000374877 NASPP49321 788 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-203ENST00000374877 POLKQ9UBT6 870 aa13.73□□□□□ -0.21
CCDC40-203ENST00000374877 ZRANB1Q9UGI0 708 aa13.73□□□□□ -0.21
CCDC40-203ENST00000374877 ZBTB7BO15156 539 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-203ENST00000374877 THUMPD2Q9BTF0 503 aaKnown RBP13.73□□□□□ -0.21
CCDC40-203ENST00000374877 NCLP19338 710 aaKnown RBP13.72□□□□□ -0.21
CCDC40-203ENST00000374877 PRKAR2BP31323 418 aa13.72□□□□□ -0.21
CCDC40-203ENST00000374877 ORAI2Q96SN7 254 aa13.72□□□□□ -0.21
CCDC40-203ENST00000374877 CCDC173Q0VFZ6 552 aa13.71□□□□□ -0.21
CCDC40-203ENST00000374877 PSME1Q06323 249 aa13.71□□□□□ -0.21
CCDC40-203ENST00000374877 CHMP4BQ9H444 224 aaKnown RBP13.71□□□□□ -0.21
CCDC40-203ENST00000374877 CDC45O75419 566 aa13.7□□□□□ -0.22
CCDC40-203ENST00000374877 BAG4O95429 457 aaKnown RBP13.7□□□□□ -0.22
CCDC40-203ENST00000374877 FBLN1P23142 703 aa13.7□□□□□ -0.22
CCDC40-203ENST00000374877 TSPYL6Q8N831 410 aa13.7□□□□□ -0.22
CCDC40-203ENST00000374877 KIF24Q5T7B8 1368 aa13.69□□□□□ -0.22
CCDC40-203ENST00000374877 HMOX1P09601 288 aa13.69□□□□□ -0.22
CCDC40-203ENST00000374877 SIRT2Q8IXJ6 389 aa13.69□□□□□ -0.22
CCDC40-203ENST00000374877 TRPM3Q9HCF6 1732 aaPredicted RBP13.69□□□□□ -0.22
CCDC40-203ENST00000374877 KLHL40Q2TBA0 621 aa13.69□□□□□ -0.22
CCDC40-203ENST00000374877 MCTP1Q6DN14 999 aa13.69□□□□□ -0.22
CCDC40-203ENST00000374877 MARF1Q9Y4F3 1742 aaKnown RBP13.69□□□□□ -0.22
CCDC40-203ENST00000374877 MRPL50Q8N5N7 158 aaKnown RBP13.69□□□□□ -0.22
CCDC40-203ENST00000374877 VAMP4O75379 141 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 FCHSD2O94868 740 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 KIAA1211Q6ZU35 1233 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 SBNO1A3KN83 1393 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 MSNP26038 577 aaKnown RBP13.68□□□□□ -0.22
CCDC40-203ENST00000374877 NLRP6P59044 892 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 PKNOX2Q96KN3 472 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 ABTB2Q8N961 1025 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 ZNF428Q96B54 188 aa13.68□□□□□ -0.22
CCDC40-203ENST00000374877 MAP2P11137 1827 aaKnown RBP13.67□□□□□ -0.22
CCDC40-203ENST00000374877 TPM2P07951 284 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 CAVIN1Q6NZI2 390 aaKnown RBP13.67□□□□□ -0.22
CCDC40-203ENST00000374877 ZSCAN30Q86W11 494 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 EMILIN1Q9Y6C2 1016 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 KRT28Q7Z3Y7 464 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 NPHP3Q7Z494 1330 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 FOXO3O43524 673 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 GSPT1P15170 499 aaKnown RBP13.67□□□□□ -0.22
CCDC40-203ENST00000374877 CALD1Q05682 793 aaKnown RBP13.67□□□□□ -0.22
CCDC40-203ENST00000374877 PHACTR3Q96KR7 559 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 PPP1R9BQ96SB3 815 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 ZMYND15Q9H091 742 aa13.67□□□□□ -0.22
CCDC40-203ENST00000374877 SLIT3O75094 1523 aa13.66□□□□□ -0.22
CCDC40-203ENST00000374877 LTBP4Q8N2S1 1624 aa13.66□□□□□ -0.22
CCDC40-203ENST00000374877 BRPF1P55201 1214 aaPredicted RBP13.65□□□□□ -0.22
CCDC40-203ENST00000374877 RABEP1Q15276 862 aa13.65□□□□□ -0.22
CCDC40-203ENST00000374877 ARHGAP45Q92619 1136 aa13.65□□□□□ -0.22
CCDC40-203ENST00000374877 AK9Q5TCS8 1911 aa13.65□□□□□ -0.22
CCDC40-203ENST00000374877 RTL1A6NKG5 1358 aa13.65□□□□□ -0.22
CCDC40-203ENST00000374877 RRS1Q15050 365 aaKnown RBP13.65□□□□□ -0.22
CCDC40-203ENST00000374877 NFE2L2Q16236 605 aa13.65□□□□□ -0.22
CCDC40-203ENST00000374877 IL13P35225 146 aa13.64□□□□□ -0.23
CCDC40-203ENST00000374877 NUCB2P80303 420 aa13.64□□□□□ -0.23
CCDC40-203ENST00000374877 TWISTNBQ3B726 338 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-203ENST00000374877 KCNH5Q8NCM2 988 aa13.64□□□□□ -0.23
CCDC40-203ENST00000374877 PXDNQ92626 1479 aa13.64□□□□□ -0.23
CCDC40-203ENST00000374877 FLT4P35916 1363 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms