RNA–Protein interactions for RNA: ENST00000368213.9

PTPRK-205, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,816 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-205ENST00000368213 ATP6V1AP38606 617 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 TMPOP42166 694 aaKnown RBP12.91□□□□□ -0.34
PTPRK-205ENST00000368213 TDO2P48775 406 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 C16orf71Q8IYS4 520 aaPredicted RBP12.91□□□□□ -0.34
PTPRK-205ENST00000368213 TPM1P09493 284 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 LRRCC1Q9C099 1032 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 TFCP2L1Q9NZI6 479 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 DUOX2Q9NRD8 1548 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 IDH1O75874 414 aaKnown RBP12.91□□□□□ -0.34
PTPRK-205ENST00000368213 DDX46Q7L014 1031 aaKnown RBP12.91□□□□□ -0.34
PTPRK-205ENST00000368213 ANKRD20A12PQ8NF67 263 aa12.91□□□□□ -0.34
PTPRK-205ENST00000368213 THUMPD2Q9BTF0 503 aaKnown RBP12.91□□□□□ -0.34
PTPRK-205ENST00000368213 CDCA7LQ96GN5 454 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 ZBTB3Q9H5J0 574 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 TRAPPC8Q9Y2L5 1435 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 WDR62O43379 1518 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 BECN2A8MW95 431 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 IFIT5Q13325 482 aaKnown RBP12.9□□□□□ -0.34
PTPRK-205ENST00000368213 TTC21AQ8NDW8 1320 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 BICD2Q8TD16 824 aa12.9□□□□□ -0.34
PTPRK-205ENST00000368213 NBPF6Q5VWK0 638 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 PPP1R42Q7Z4L9 355 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 NBPF5PQ86XG9 351 aaPredicted RBP12.89□□□□□ -0.35
PTPRK-205ENST00000368213 NBPF4Q96M43 638 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 CT47B1P0C2W7 299 aaPredicted RBP12.89□□□□□ -0.35
PTPRK-205ENST00000368213 AKAP2Q9Y2D5 859 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 GOLGA6L19H0YKK7 550 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 DZIP1Q86YF9 867 aaKnown RBP12.89□□□□□ -0.35
PTPRK-205ENST00000368213 USP5P45974 858 aa12.89□□□□□ -0.35
PTPRK-205ENST00000368213 KCNA6P17658 529 aa12.88□□□□□ -0.35
PTPRK-205ENST00000368213 CDK5RAP3Q96JB5 506 aa12.88□□□□□ -0.35
PTPRK-205ENST00000368213 CLEC11AQ9Y240 323 aa12.88□□□□□ -0.35
PTPRK-205ENST00000368213 NUP153P49790 1475 aaKnown RBP12.88□□□□□ -0.35
PTPRK-205ENST00000368213 ANKRD18BA2A2Z9 1011 aa12.88□□□□□ -0.35
PTPRK-205ENST00000368213 SCAF11Q99590 1463 aaKnown RBP12.88□□□□□ -0.35
PTPRK-205ENST00000368213 POLR3DP05423 398 aaPredicted RBP12.87□□□□□ -0.35
PTPRK-205ENST00000368213 ATP2B1P20020 1258 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 SOGA3Q5TF21 947 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 HYPKQ9NX55 129 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 IL2RBP14784 551 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 CCDC69A6NI79 296 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 GLIPR1L2Q4G1C9 344 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 GCC1Q96CN9 775 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 KIAA0556O60303 1618 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 WDR78Q5VTH9 848 aa12.87□□□□□ -0.35
PTPRK-205ENST00000368213 SLC5A1P13866 664 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 GRM1Q13255 1194 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 NUP133Q8WUM0 1156 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 AIDAQ96BJ3 306 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 CDC5LQ99459 802 aaKnown RBP12.86□□□□□ -0.35
PTPRK-205ENST00000368213 ATP10AO60312 1499 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 MAP4K4O95819 1239 aaPredicted RBP12.86□□□□□ -0.35
PTPRK-205ENST00000368213 SLF2Q8IX21 1173 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 NAP1L5Q96NT1 182 aaPredicted RBP12.86□□□□□ -0.35
PTPRK-205ENST00000368213 BTG4Q9NY30 223 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 BCAR3O75815 825 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 SETDB2Q96T68 719 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 STK32BQ9NY57 414 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
PTPRK-205ENST00000368213 WWC3Q9ULE0 1092 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 PARP3Q9Y6F1 533 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 A0A0U1RQG5 324 aaPredicted RBP12.86□□□□□ -0.35
PTPRK-205ENST00000368213 ATF7IPQ6VMQ6 1270 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 ZNF287Q9HBT7 754 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 IFT57Q9NWB7 429 aa12.86□□□□□ -0.35
PTPRK-205ENST00000368213 PPIP5K1Q6PFW1 1433 aa12.85□□□□□ -0.35
PTPRK-205ENST00000368213 UBAC1Q9BSL1 405 aa12.85□□□□□ -0.35
PTPRK-205ENST00000368213 KRT18P05783 430 aaKnown RBP12.85□□□□□ -0.35
PTPRK-205ENST00000368213 SNRPA1P09661 255 aaKnown RBP12.85□□□□□ -0.35
PTPRK-205ENST00000368213 PDE4AP27815 886 aa12.85□□□□□ -0.35
PTPRK-205ENST00000368213 RBM19Q9Y4C8 960 aaKnown RBP12.84□□□□□ -0.35
PTPRK-205ENST00000368213 ITSN2Q9NZM3 1697 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 MYO1BO43795 1136 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 MYCNP04198 464 aaPredicted RBP12.84□□□□□ -0.35
PTPRK-205ENST00000368213 TRIM22Q8IYM9 498 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 UGGT2Q9NYU1 1516 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 MAP3K1Q13233 1512 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 TBX22Q9Y458 520 aa12.84□□□□□ -0.35
PTPRK-205ENST00000368213 CCDC73Q6ZRK6 1079 aa12.83□□□□□ -0.36
PTPRK-205ENST00000368213 RTCBQ9Y3I0 505 aaKnown RBP12.83□□□□□ -0.36
PTPRK-205ENST00000368213 EPS15P42566 896 aa12.83□□□□□ -0.36
PTPRK-205ENST00000368213 IL1RAPL2Q9NP60 686 aa12.83□□□□□ -0.36
PTPRK-205ENST00000368213 DDX11L8A8MPP1 907 aa12.83□□□□□ -0.36
PTPRK-205ENST00000368213 IPO7O95373 1038 aaKnown RBP12.82□□□□□ -0.36
PTPRK-205ENST00000368213 CTNNA3Q9UI47 895 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 DDX49Q9Y6V7 483 aaKnown RBP12.82□□□□□ -0.36
PTPRK-205ENST00000368213 DNAAF4Q8WXU2 420 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 IBSPP21815 317 aaPredicted RBP12.82□□□□□ -0.36
PTPRK-205ENST00000368213 ZNF76P36508 570 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 MKNK2Q9HBH9 465 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 TXLNAP40222 546 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 CWC25Q9NXE8 425 aaPredicted RBP12.82□□□□□ -0.36
PTPRK-205ENST00000368213 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.82□□□□□ -0.36
PTPRK-205ENST00000368213 CHMP4BP1P59074 171 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 PDE3AQ14432 1141 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 USP21Q9UK80 565 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 NSD2O96028 1365 aa12.82□□□□□ -0.36
PTPRK-205ENST00000368213 NUP160Q12769 1436 aa12.81□□□□□ -0.36
PTPRK-205ENST00000368213 ATP5J2-PTCD1G3V325 749 aa12.8□□□□□ -0.36
PTPRK-205ENST00000368213 CT47A1Q5JQC4 288 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms