RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 DRC1Q96MC2 740 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 KIF5CO60282 957 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 C10orf67Q8IYJ2 551 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 HFM1A2PYH4 1435 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 TUBB4AP04350 444 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 ODF2Q5BJF6 829 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC121Q6ZUS5 278 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 MAGEC2Q9UBF1 373 aaPredicted RBP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 ERICH3Q5RHP9 1530 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 ANO10Q9NW15 660 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 LRRC9Q6ZRR7 1453 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 ASXL3Q9C0F0 2248 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 BMP2KLQ5H9B9 411 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 PRIM1P49642 420 aaKnown RBP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 TBC1D9Q6ZT07 1266 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 DACH1Q9UI36 760 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 RBSNQ9H1K0 784 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 HIP1O00291 1037 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 DHX16O60231 1041 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 JAKMIP1Q96N16 626 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 HMGB1P09429 215 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 CROCCQ5TZA2 2017 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 C17orf53Q8N3J3 647 aaPredicted RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 PLPPR3Q6T4P5 718 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 ARFGAP3Q9NP61 516 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 DHX29Q7Z478 1369 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC181Q5TID7 509 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 UBTFL1P0CB47 393 aaPredicted RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 SSR1P43307 286 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 FKBP5Q13451 457 aaPredicted RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 ATF7IPQ6VMQ6 1270 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 MARCH6O60337 910 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 CLNS1AP54105 237 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 LRRFIP1Q32MZ4 808 aaKnown RBP7.1□□□□□ -1.27
VPS13B-203ENST00000358544 MSL1Q68DK7 614 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 ARAP1Q96P48 1450 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC186Q7Z3E2 898 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 FERMT3Q86UX7 667 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 CEP250Q9BV73 2442 aa7.1□□□□□ -1.27
VPS13B-203ENST00000358544 SCAPERQ9BY12 1400 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 TTC12Q9H892 705 aaPredicted RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 SLU7O95391 586 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 MAP2K2P36507 400 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 CPSF2Q9P2I0 782 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 CUX1P39880 1505 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 BRPF1P55201 1214 aaPredicted RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 UBE2HP62256 183 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 EVC2Q86UK5 1308 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 MAP3K1Q13233 1512 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 CASTP20810 708 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 HSPA4P34932 840 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 ANKRD1Q15327 319 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 KIF4BQ2VIQ3 1234 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 BRD2P25440 801 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 ZNF500O60304 480 aaPredicted RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 PIBF1Q8WXW3 757 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 FSD2A1L4K1 749 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 ENOX2Q16206 610 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 CFAP100Q494V2 611 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 AK9Q5TCS8 1911 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 GOLGA6L9A6NEM1 432 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 TOP1P11387 765 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 EZRP15311 586 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 STK3Q13188 491 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 NKTRP30414 1462 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 RARSP54136 660 aaKnown RBP7.09□□□□□ -1.27
VPS13B-203ENST00000358544 CERS3Q8IU89 383 aa7.09□□□□□ -1.27
VPS13B-203ENST00000358544 ERO1AQ96HE7 468 aa7.09□□□□□ -1.28
VPS13B-203ENST00000358544 COG3Q96JB2 828 aa7.09□□□□□ -1.28
VPS13B-203ENST00000358544 GPRASP1Q5JY77 1395 aa7.09□□□□□ -1.28
VPS13B-203ENST00000358544 U2AF2P26368 475 aaKnown RBP eCLIP7.08□□□□□ -1.281e-6■■■■□ 25.1
VPS13B-203ENST00000358544 GNG11P61952 73 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 C9orf78Q9NZ63 289 aaPredicted RBP7.08□□□□□ -1.28
VPS13B-203ENST00000358544 GNAI3P08754 354 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 ELF2Q15723 593 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 KRBA2Q6ZNG9 492 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 CEP57Q86XR8 500 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 POTEDQ86YR6 584 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 TMEM57Q8N5G2 664 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 ZNF165P49910 485 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 NAA25Q14CX7 972 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 GOLGA1Q92805 767 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 TMX1Q9H3N1 280 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 CFAP45Q9UL16 551 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 DOPEY2Q9Y3R5 2298 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 CCDC12Q8WUD4 166 aaPredicted RBP7.08□□□□□ -1.28
VPS13B-203ENST00000358544 RSRC1Q96IZ7 334 aaKnown RBP7.08□□□□□ -1.28
VPS13B-203ENST00000358544 SRCIN1Q9C0H9 1055 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 CCDC175P0C221 793 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 CEP112Q8N8E3 955 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 RIOK3O14730 519 aaKnown RBP7.08□□□□□ -1.28
VPS13B-203ENST00000358544 MEX3CQ5U5Q3 659 aaKnown RBP7.08□□□□□ -1.28
VPS13B-203ENST00000358544 LMOD2Q6P5Q4 547 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 RAI14Q9P0K7 980 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 MICALL1Q8N3F8 863 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 TRAK1Q9UPV9 953 aa7.08□□□□□ -1.28
VPS13B-203ENST00000358544 EBAG9O00559 213 aa7.07□□□□□ -1.28
VPS13B-203ENST00000358544 NBPF11Q86T75 865 aa7.07□□□□□ -1.28
VPS13B-203ENST00000358544 CASKIN1Q8WXD9 1431 aa7.07□□□□□ -1.28
VPS13B-203ENST00000358544 TSC1Q92574 1164 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms