RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 RUNDC1Q96C34 613 aa33.68■■■□□ 2.98
SSBP3-202ENST00000357475 THRAP3Q9Y2W1 955 aaKnown RBP33.68■■■□□ 2.98
SSBP3-202ENST00000357475 TATP17735 454 aaPredicted RBP33.67■■■□□ 2.98
SSBP3-202ENST00000357475 BARGINQ6ZT62 677 aa33.66■■■□□ 2.98
SSBP3-202ENST00000357475 THSD7AQ9UPZ6 1657 aa33.65■■■□□ 2.98
SSBP3-202ENST00000357475 LRRC37A3O60309 1634 aa33.65■■■□□ 2.98
SSBP3-202ENST00000357475 DLG5Q8TDM6 1919 aa33.65■■■□□ 2.98
SSBP3-202ENST00000357475 POTEAQ6S8J7 498 aa33.64■■■□□ 2.98
SSBP3-202ENST00000357475 APAF1O14727 1248 aa33.63■■■□□ 2.97
SSBP3-202ENST00000357475 MTHFSDQ2M296 383 aaKnown RBP33.63■■■□□ 2.97
SSBP3-202ENST00000357475 MAPK8IP3Q9UPT6 1336 aa33.63■■■□□ 2.97
SSBP3-202ENST00000357475 PNNQ9H307 717 aaKnown RBP33.63■■■□□ 2.97
SSBP3-202ENST00000357475 RRP7AQ9Y3A4 280 aaKnown RBP33.62■■■□□ 2.97
SSBP3-202ENST00000357475 NEUROD2Q15784 382 aa33.57■■■□□ 2.96
SSBP3-202ENST00000357475 PLEKHO1Q53GL0 409 aaPredicted RBP33.57■■■□□ 2.96
SSBP3-202ENST00000357475 ZCRB1Q8TBF4 217 aaKnown RBP33.57■■■□□ 2.96
SSBP3-202ENST00000357475 TMPOP42166 694 aaKnown RBP33.56■■■□□ 2.96
SSBP3-202ENST00000357475 RBM6P78332 1123 aaKnown RBP33.56■■■□□ 2.96
SSBP3-202ENST00000357475 ONECUT3O60422 494 aaPredicted RBP33.55■■■□□ 2.96
SSBP3-202ENST00000357475 NEFMP07197 916 aa33.55■■■□□ 2.96
SSBP3-202ENST00000357475 NFE2L2Q16236 605 aa33.55■■■□□ 2.96
SSBP3-202ENST00000357475 CDCA7Q9BWT1 371 aaPredicted RBP33.55■■■□□ 2.96
SSBP3-202ENST00000357475 TNS2Q63HR2 1409 aa33.55■■■□□ 2.96
SSBP3-202ENST00000357475 A0A0G2JS52 829 aa33.54■■■□□ 2.96
SSBP3-202ENST00000357475 MYT1Q01538 1121 aa33.54■■■□□ 2.96
SSBP3-202ENST00000357475 AMOTQ4VCS5 1084 aa33.54■■■□□ 2.96
SSBP3-202ENST00000357475 ZNF530Q6P9A1 599 aaPredicted RBP33.54■■■□□ 2.96
SSBP3-202ENST00000357475 SALL2Q9Y467 1007 aaPredicted RBP33.54■■■□□ 2.96
SSBP3-202ENST00000357475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.53■■■□□ 2.966e-7■■□□□ 12.6
SSBP3-202ENST00000357475 SPG7Q9UQ90 795 aa33.53■■■□□ 2.96
SSBP3-202ENST00000357475 BRWD3Q6RI45 1802 aa33.53■■■□□ 2.96
SSBP3-202ENST00000357475 PLEKHG2Q9H7P9 1386 aa33.53■■■□□ 2.96
SSBP3-202ENST00000357475 VIRMAQ69YN4 1812 aaKnown RBP33.53■■■□□ 2.96
SSBP3-202ENST00000357475 CYP27B1O15528 508 aa33.53■■■□□ 2.96
SSBP3-202ENST00000357475 RXRBP28702 533 aa33.51■■■□□ 2.95
SSBP3-202ENST00000357475 DDB1Q16531 1140 aa33.51■■■□□ 2.95
SSBP3-202ENST00000357475 GAS2L2Q8NHY3 880 aa33.51■■■□□ 2.95
SSBP3-202ENST00000357475 DDX54Q8TDD1 881 aaKnown RBP33.51■■■□□ 2.95
SSBP3-202ENST00000357475 EXOC5O00471 708 aa33.5■■■□□ 2.95
SSBP3-202ENST00000357475 SEPT12Q8IYM1 358 aa33.5■■■□□ 2.95
SSBP3-202ENST00000357475 YTHDC1Q96MU7 727 aaKnown RBP33.5■■■□□ 2.95
SSBP3-202ENST00000357475 RIPK4P57078 832 aa33.49■■■□□ 2.95
SSBP3-202ENST00000357475 HNRNPUQ00839 825 aaKnown RBP eCLIP33.49■■■□□ 2.953e-6■□□□□ 10.4
SSBP3-202ENST00000357475 PHKG2P15735 406 aa33.48■■■□□ 2.95
SSBP3-202ENST00000357475 PCDH11XQ9BZA7 1347 aa33.48■■■□□ 2.95
SSBP3-202ENST00000357475 PCDH11YQ9BZA8 1340 aa33.48■■■□□ 2.95
SSBP3-202ENST00000357475 TRIM35Q9UPQ4 493 aa33.47■■■□□ 2.95
SSBP3-202ENST00000357475 RGS12O14924 1447 aa33.46■■■□□ 2.95
SSBP3-202ENST00000357475 MAP3K5Q99683 1374 aa33.46■■■□□ 2.95
SSBP3-202ENST00000357475 DCTN1Q14203 1278 aa33.45■■■□□ 2.95
SSBP3-202ENST00000357475 AKAP4Q5JQC9 854 aa33.45■■■□□ 2.95
SSBP3-202ENST00000357475 IFNL2Q8IZJ0 200 aa33.44■■■□□ 2.94
SSBP3-202ENST00000357475 MARCH10Q8NA82 808 aaPredicted RBP33.44■■■□□ 2.94
SSBP3-202ENST00000357475 C1orf141Q5JVX7 400 aa33.43■■■□□ 2.94
SSBP3-202ENST00000357475 GNAT3A8MTJ3 354 aa33.43■■■□□ 2.94
SSBP3-202ENST00000357475 MPRIPQ6WCQ1 1025 aa33.43■■■□□ 2.94
SSBP3-202ENST00000357475 THUMPD2Q9BTF0 503 aaKnown RBP33.43■■■□□ 2.94
SSBP3-202ENST00000357475 TOGARAM1Q9Y4F4 1720 aa33.43■■■□□ 2.94
SSBP3-202ENST00000357475 KDM6AO15550 1401 aaPredicted RBP33.42■■■□□ 2.94
SSBP3-202ENST00000357475 SCN11AQ9UI33 1791 aa33.42■■■□□ 2.94
SSBP3-202ENST00000357475 ADAMTS7Q9UKP4 1686 aa33.42■■■□□ 2.94
SSBP3-202ENST00000357475 MCM10Q7L590 875 aa33.42■■■□□ 2.94
SSBP3-202ENST00000357475 FAM182BQ5T319 152 aa33.41■■■□□ 2.94
SSBP3-202ENST00000357475 LGR6Q9HBX8 967 aa33.41■■■□□ 2.94
SSBP3-202ENST00000357475 IL17REQ8NFR9 667 aa33.39■■■□□ 2.94
SSBP3-202ENST00000357475 PDE3BQ13370 1112 aa33.38■■■□□ 2.93
SSBP3-202ENST00000357475 WWC1Q8IX03 1113 aa33.37■■■□□ 2.93
SSBP3-202ENST00000357475 NKX1-1Q15270 411 aaPredicted RBP33.36■■■□□ 2.93
SSBP3-202ENST00000357475 DOT1LQ8TEK3 1739 aa33.36■■■□□ 2.93
SSBP3-202ENST00000357475 RNMTO43148 476 aaKnown RBP33.34■■■□□ 2.93
SSBP3-202ENST00000357475 CCDC27Q2M243 656 aa33.34■■■□□ 2.93
SSBP3-202ENST00000357475 RTF1Q92541 710 aaKnown RBP33.34■■■□□ 2.93
SSBP3-202ENST00000357475 ZNF521Q96K83 1311 aa33.34■■■□□ 2.93
SSBP3-202ENST00000357475 EP400Q96L91 3159 aa33.33■■■□□ 2.93
SSBP3-202ENST00000357475 HTATSF1O43719 755 aaKnown RBP33.33■■■□□ 2.93
SSBP3-202ENST00000357475 CEMIPQ8WUJ3 1361 aa33.32■■■□□ 2.92
SSBP3-202ENST00000357475 DCAF5Q96JK2 942 aa33.32■■■□□ 2.92
SSBP3-202ENST00000357475 SIPA1L3O60292 1781 aaPredicted RBP33.31■■■□□ 2.92
SSBP3-202ENST00000357475 ITGB4P16144 1822 aa33.31■■■□□ 2.92
SSBP3-202ENST00000357475 LMOD3Q0VAK6 560 aa33.31■■■□□ 2.92
SSBP3-202ENST00000357475 NCBP3Q53F19 620 aaKnown RBP33.31■■■□□ 2.92
SSBP3-202ENST00000357475 KRT27Q7Z3Y8 459 aa33.31■■■□□ 2.92
SSBP3-202ENST00000357475 KAT6BQ8WYB5 2073 aa33.3■■■□□ 2.92
SSBP3-202ENST00000357475 HSP90AB1P08238 724 aaKnown RBP33.29■■■□□ 2.92
SSBP3-202ENST00000357475 ZBED9Q6R2W3 1325 aa33.28■■■□□ 2.92
SSBP3-202ENST00000357475 SBF2Q86WG5 1849 aa33.28■■■□□ 2.92
SSBP3-202ENST00000357475 NGEFQ8N5V2 710 aa33.28■■■□□ 2.92
SSBP3-202ENST00000357475 MRC1P22897 1456 aa33.27■■■□□ 2.92
SSBP3-202ENST00000357475 ACSBG1Q96GR2 724 aa33.26■■■□□ 2.91
SSBP3-202ENST00000357475 SPINK5Q9NQ38 1064 aaPredicted RBP33.26■■■□□ 2.91
SSBP3-202ENST00000357475 CDCA7LQ96GN5 454 aa33.23■■■□□ 2.91
SSBP3-202ENST00000357475 NFATC2IPQ8NCF5 419 aa33.22■■■□□ 2.91
SSBP3-202ENST00000357475 SLC52A2Q9HAB3 445 aa33.22■■■□□ 2.91
SSBP3-202ENST00000357475 KCNQ2O43526 872 aa33.21■■■□□ 2.91
SSBP3-202ENST00000357475 PRIM1P49642 420 aaKnown RBP33.21■■■□□ 2.91
SSBP3-202ENST00000357475 PTF1AQ7RTS3 328 aa33.21■■■□□ 2.91
SSBP3-202ENST00000357475 MIS18AQ9NYP9 233 aa33.21■■■□□ 2.91
SSBP3-202ENST00000357475 ERVV-2B6SEH9 535 aa33.2■■■□□ 2.91
SSBP3-202ENST00000357475 WDR63Q8IWG1 891 aa33.2■■■□□ 2.91
SSBP3-202ENST00000357475 BCL9O00512 1426 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms