RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TSPOAP1O95153 1857 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 POM121CA8CG34 1229 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 RSPH4AQ5TD94 716 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 ANKLE1Q8NAG6 615 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 NRKQ7Z2Y5 1582 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 UBR1Q8IWV7 1749 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 PLEKHH2Q8IVE3 1493 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 GPRASP1Q5JY77 1395 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 DHX29Q7Z478 1369 aaKnown RBP3.49□□□□□ -1.85
VPS54-202ENST00000354504 ABCC3O15438 1527 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 ARHGAP5Q13017 1502 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 DNAJB2P25686 324 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 SYMPKQ92797 1274 aaKnown RBP3.49□□□□□ -1.85
VPS54-202ENST00000354504 PCDHGC3Q9UN70 934 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 ASXL2Q76L83 1435 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 AKAP12Q02952 1782 aa3.49□□□□□ -1.85
VPS54-202ENST00000354504 SLC10A3P09131 477 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 SH3D19Q5HYK7 790 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 RTL5Q5HYW3 569 aaPredicted RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 CABLES1Q8TDN4 633 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 ADAMTS19Q8TE59 1207 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 SPIRE2Q8WWL2 714 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 SEPT9Q9UHD8 586 aaPredicted RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 CFAP65Q6ZU64 1925 aaKnown RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 AVPP01185 164 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 SIN3AQ96ST3 1273 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 VIRMAQ69YN4 1812 aaKnown RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 TTBK1Q5TCY1 1321 aaPredicted RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 CRYBG1Q9Y4K1 1723 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 POGZQ7Z3K3 1410 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 C11orf95C9JLR9 678 aaPredicted RBP3.48□□□□□ -1.85
VPS54-202ENST00000354504 HPS5Q9UPZ3 1129 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 COG6Q9Y2V7 657 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 PRAG1Q86YV5 1406 aa3.48□□□□□ -1.85
VPS54-202ENST00000354504 ARHGEF40Q8TER5 1519 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 GJA5P36382 358 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 NBPF8Q3BBV2 869 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 MSS51Q4VC12 460 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 HOMEZQ8IX15 550 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 RBM46Q8TBY0 533 aaKnown RBP3.47□□□□□ -1.85
VPS54-202ENST00000354504 RSPH6AQ9H0K4 717 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 ANKRD50Q9ULJ7 1429 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 NALCNQ8IZF0 1738 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 MYOM2P54296 1465 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 COL17A1Q9UMD9 1497 aaPredicted RBP3.47□□□□□ -1.85
VPS54-202ENST00000354504 RFC5P40937 340 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 RANGAP1P46060 587 aaPredicted RBP3.47□□□□□ -1.85
VPS54-202ENST00000354504 GDPD2Q9HCC8 539 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 C3P01024 1663 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 SPATA31D1Q6ZQQ2 1576 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 DDX11L8A8MPP1 907 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 TRAK2O60296 914 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 CLCN1P35523 988 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 KMT5BQ4FZB7 885 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 TMEM134Q9H6X4 195 aa3.47□□□□□ -1.85
VPS54-202ENST00000354504 MON2Q7Z3U7 1717 aa3.46□□□□□ -1.85
VPS54-202ENST00000354504 CD46P15529 392 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 SKIV2LQ15477 1246 aaKnown RBP3.46□□□□□ -1.86
VPS54-202ENST00000354504 TBC1D2BQ9UPU7 963 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 FANCAO15360 1455 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 AGLP35573 1532 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 ZNF142P52746 1687 aaPredicted RBP3.46□□□□□ -1.86
VPS54-202ENST00000354504 KIF20BQ96Q89 1820 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 NR1I2O75469 434 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 NEO1Q92859 1461 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 NOS1P29475 1434 aa3.46□□□□□ -1.86
VPS54-202ENST00000354504 CLK2P49760 499 aaKnown RBP3.46□□□□□ -1.86
VPS54-202ENST00000354504 CTC1Q2NKJ3 1217 aa3.45□□□□□ -1.86
VPS54-202ENST00000354504 CHMP7Q8WUX9 453 aaPredicted RBP3.45□□□□□ -1.86
VPS54-202ENST00000354504 XIRP1Q702N8 1843 aaKnown RBP3.45□□□□□ -1.86
VPS54-202ENST00000354504 RGPD8O14715 1765 aaPredicted RBP3.45□□□□□ -1.86
VPS54-202ENST00000354504 ZNF598Q86UK7 904 aaKnown RBP3.45□□□□□ -1.86
VPS54-202ENST00000354504 GJD4Q96KN9 370 aaPredicted RBP3.45□□□□□ -1.86
VPS54-202ENST00000354504 PTPRMP28827 1452 aa3.45□□□□□ -1.86
VPS54-202ENST00000354504 WBP1LQ9NX94 342 aa3.45□□□□□ -1.86
VPS54-202ENST00000354504 RGPD1P0DJD0 1748 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 WASHC2AQ641Q2 1341 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 ZPR1O75312 459 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 NPAS3Q8IXF0 933 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 MPHOSPH9Q99550 1183 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 PODXL2Q9NZ53 605 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 PNMA3Q9UL41 463 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 SCAPERQ9BY12 1400 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 DLG5Q8TDM6 1919 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 KIF15Q9NS87 1388 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 PER1O15534 1290 aaPredicted RBP3.44□□□□□ -1.86
VPS54-202ENST00000354504 CTDSPL2Q05D32 466 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 RSBN1LQ6PCB5 846 aaPredicted RBP3.44□□□□□ -1.86
VPS54-202ENST00000354504 LRRN4Q8WUT4 740 aa3.44□□□□□ -1.86
VPS54-202ENST00000354504 ADH1BP00325 375 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 USP46P62068 366 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 RIC3Q7Z5B4 369 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 CCER1Q8TC90 406 aaPredicted RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 PCMTD1Q96MG8 357 aaPredicted RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 MTRQ99707 1265 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 ARHGAP31Q2M1Z3 1444 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 STRCP1A6NGW2 1772 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.43□□□□□ -1.86
VPS54-202ENST00000354504 TULP4Q9NRJ4 1543 aa3.43□□□□□ -1.86
VPS54-202ENST00000354504 ADGRL1O94910 1474 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms