RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 ZNF827Q17R98 1081 aa20.16■□□□□ 0.82
PRPF40A-201ENST00000354363 TIMELESSQ9UNS1 1208 aa20.16■□□□□ 0.82
PRPF40A-201ENST00000354363 SMG6Q86US8 1419 aaKnown RBP20.16■□□□□ 0.82
PRPF40A-201ENST00000354363 PRIM1P49642 420 aaKnown RBP20.15■□□□□ 0.82
PRPF40A-201ENST00000354363 USHBP1Q8N6Y0 703 aa20.15■□□□□ 0.82
PRPF40A-201ENST00000354363 SGIP1Q9BQI5 828 aa20.15■□□□□ 0.82
PRPF40A-201ENST00000354363 CARD14Q9BXL6 1004 aa20.15■□□□□ 0.82
PRPF40A-201ENST00000354363 DCAF8L1A6NGE4 600 aa20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 SLC27A3Q5K4L6 730 aa20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 SYTL4Q96C24 671 aaPredicted RBP20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 MAP2P11137 1827 aaKnown RBP20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 NSD2O96028 1365 aa20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 INSRP06213 1382 aa20.14■□□□□ 0.81
PRPF40A-201ENST00000354363 NSD3Q9BZ95 1437 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 YY1P25490 414 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 HSP90AB2PQ58FF8 381 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 FLT4P35916 1363 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 CGNL1Q0VF96 1302 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 AKT1S1Q96B36 256 aa20.13■□□□□ 0.81
PRPF40A-201ENST00000354363 KIF24Q5T7B8 1368 aa20.12■□□□□ 0.81
PRPF40A-201ENST00000354363 CLSPNQ9HAW4 1339 aa20.12■□□□□ 0.81
PRPF40A-201ENST00000354363 ANKRD26Q9UPS8 1709 aa20.11■□□□□ 0.81
PRPF40A-201ENST00000354363 RAPGEF4Q8WZA2 1011 aa20.11■□□□□ 0.81
PRPF40A-201ENST00000354363 COL24A1Q17RW2 1714 aa20.11■□□□□ 0.81
PRPF40A-201ENST00000354363 PCGF6Q9BYE7 350 aa20.1■□□□□ 0.81
PRPF40A-201ENST00000354363 FHDC1Q9C0D6 1143 aaPredicted RBP20.1■□□□□ 0.81
PRPF40A-201ENST00000354363 TATP17735 454 aaPredicted RBP20.09■□□□□ 0.81
PRPF40A-201ENST00000354363 KCNQ4P56696 695 aa20.09■□□□□ 0.81
PRPF40A-201ENST00000354363 SYT17Q9BSW7 474 aa20.09■□□□□ 0.81
PRPF40A-201ENST00000354363 EMILIN1Q9Y6C2 1016 aa20.09■□□□□ 0.81
PRPF40A-201ENST00000354363 ITGB4P16144 1822 aa20.08■□□□□ 0.81
PRPF40A-201ENST00000354363 PKD1L3Q7Z443 1732 aa20.08■□□□□ 0.8
PRPF40A-201ENST00000354363 ARXQ96QS3 562 aa20.07■□□□□ 0.8
PRPF40A-201ENST00000354363 CHD4Q14839 1912 aa20.07■□□□□ 0.8
PRPF40A-201ENST00000354363 PNPLA7Q6ZV29 1317 aa20.07■□□□□ 0.8
PRPF40A-201ENST00000354363 TAF1LQ8IZX4 1826 aa20.06■□□□□ 0.8
PRPF40A-201ENST00000354363 SLC16A10Q8TF71 515 aa20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 TOGARAM1Q9Y4F4 1720 aa20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 PCDH11XQ9BZA7 1347 aa20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 PCDH11YQ9BZA8 1340 aa20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 TFCP2L1Q9NZI6 479 aa20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 CCNL1Q9UK58 526 aaPredicted RBP20.05■□□□□ 0.8
PRPF40A-201ENST00000354363 NCAPD2Q15021 1401 aa20.04■□□□□ 0.8
PRPF40A-201ENST00000354363 C5P01031 1676 aa20.04■□□□□ 0.8
PRPF40A-201ENST00000354363 MAP3K5Q99683 1374 aa20.04■□□□□ 0.8
PRPF40A-201ENST00000354363 PPM1GO15355 546 aaPredicted RBP20.02■□□□□ 0.8
PRPF40A-201ENST00000354363 CYP27B1O15528 508 aa20.02■□□□□ 0.8
PRPF40A-201ENST00000354363 WASHC2AQ641Q2 1341 aa20.02■□□□□ 0.79
PRPF40A-201ENST00000354363 POLR3GLQ9BT43 218 aa20.01■□□□□ 0.79
PRPF40A-201ENST00000354363 UTRNP46939 3433 aa20■□□□□ 0.79
PRPF40A-201ENST00000354363 POLD1P28340 1107 aa19.98■□□□□ 0.79
PRPF40A-201ENST00000354363 POLKQ9UBT6 870 aa19.98■□□□□ 0.79
PRPF40A-201ENST00000354363 MPRIPQ6WCQ1 1025 aa19.98■□□□□ 0.79
PRPF40A-201ENST00000354363 EYA1Q99502 592 aa19.98■□□□□ 0.79
PRPF40A-201ENST00000354363 PALLDQ8WX93 1383 aa19.97■□□□□ 0.79
PRPF40A-201ENST00000354363 EIF4G2P78344 907 aaKnown RBP eCLIP19.97■□□□□ 0.79
PRPF40A-201ENST00000354363 HSPA5P11021 654 aaKnown RBP19.96■□□□□ 0.79
PRPF40A-201ENST00000354363 COL23A1Q86Y22 540 aaPredicted RBP19.96■□□□□ 0.79
PRPF40A-201ENST00000354363 NKX1-1Q15270 411 aaPredicted RBP19.95■□□□□ 0.78
PRPF40A-201ENST00000354363 SPG7Q9UQ90 795 aa19.95■□□□□ 0.78
PRPF40A-201ENST00000354363 KLHL34Q8N239 644 aa19.94■□□□□ 0.78
PRPF40A-201ENST00000354363 C4BP0C0L5 1744 aa19.94■□□□□ 0.78
PRPF40A-201ENST00000354363 UBR3Q6ZT12 1888 aa19.94■□□□□ 0.78
PRPF40A-201ENST00000354363 TNNT2P45379 298 aaPredicted RBP19.94■□□□□ 0.78
PRPF40A-201ENST00000354363 MSH5O43196 834 aa19.93■□□□□ 0.78
PRPF40A-201ENST00000354363 PIGBQ92521 554 aa19.93■□□□□ 0.78
PRPF40A-201ENST00000354363 SMARCC1Q92922 1105 aaPredicted RBP19.93■□□□□ 0.78
PRPF40A-201ENST00000354363 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.93■□□□□ 0.781e-8■■■■□ 25.3
PRPF40A-201ENST00000354363 EIF4A2Q14240 407 aaKnown RBP19.92■□□□□ 0.78
PRPF40A-201ENST00000354363 PANK3Q9H999 370 aa19.92■□□□□ 0.78
PRPF40A-201ENST00000354363 HMGB2P26583 209 aaKnown RBP19.91■□□□□ 0.78
PRPF40A-201ENST00000354363 GPR162Q16538 588 aa19.91■□□□□ 0.78
PRPF40A-201ENST00000354363 CCER1Q8TC90 406 aaPredicted RBP19.9■□□□□ 0.78
PRPF40A-201ENST00000354363 MSL1Q68DK7 614 aa19.89■□□□□ 0.77
PRPF40A-201ENST00000354363 ZNF784Q8NCA9 323 aaPredicted RBP19.89■□□□□ 0.77
PRPF40A-201ENST00000354363 FLAD1Q8NFF5 587 aa19.89■□□□□ 0.77
PRPF40A-201ENST00000354363 NLGN2Q8NFZ4 835 aa19.89■□□□□ 0.77
PRPF40A-201ENST00000354363 PHKG2P15735 406 aa19.88■□□□□ 0.77
PRPF40A-201ENST00000354363 IFNL2Q8IZJ0 200 aa19.88■□□□□ 0.77
PRPF40A-201ENST00000354363 PLEKHG2Q9H7P9 1386 aa19.87■□□□□ 0.77
PRPF40A-201ENST00000354363 AK7Q96M32 723 aa19.87■□□□□ 0.77
PRPF40A-201ENST00000354363 TMOD3Q9NYL9 352 aa19.87■□□□□ 0.77
PRPF40A-201ENST00000354363 IGSF1Q8N6C5 1336 aa19.86■□□□□ 0.77
PRPF40A-201ENST00000354363 AMIGO3Q86WK7 504 aa19.86■□□□□ 0.77
PRPF40A-201ENST00000354363 GOLGB1Q14789 3259 aaKnown RBP19.86■□□□□ 0.77
PRPF40A-201ENST00000354363 LOC102724428A0A0B4J2F2 783 aa19.85■□□□□ 0.77
PRPF40A-201ENST00000354363 SIK1P57059 783 aa19.85■□□□□ 0.77
PRPF40A-201ENST00000354363 PELP1Q8IZL8 1130 aaKnown RBP19.85■□□□□ 0.77
PRPF40A-201ENST00000354363 ASAP1Q9ULH1 1129 aa19.85■□□□□ 0.77
PRPF40A-201ENST00000354363 LINC00116Q8NCU8 138 aa19.84■□□□□ 0.77
PRPF40A-201ENST00000354363 PHF14O94880 888 aa19.82■□□□□ 0.76
PRPF40A-201ENST00000354363 SMIM5Q71RC9 77 aa19.82■□□□□ 0.76
PRPF40A-201ENST00000354363 MORC1Q86VD1 984 aa19.82■□□□□ 0.76
PRPF40A-201ENST00000354363 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.81■□□□□ 0.76
PRPF40A-201ENST00000354363 ITPK1Q13572 414 aa19.81■□□□□ 0.76
PRPF40A-201ENST00000354363 ATG3Q9NT62 314 aa19.81■□□□□ 0.76
PRPF40A-201ENST00000354363 ZNF831Q5JPB2 1677 aa19.8■□□□□ 0.76
PRPF40A-201ENST00000354363 YBX3P16989 372 aaKnown RBP eCLIP19.8■□□□□ 0.761e-8■■■■■ 42.6
PRPF40A-201ENST00000354363 SSFA2P28290 1259 aa19.8■□□□□ 0.76
PRPF40A-201ENST00000354363 ATP6V1AP38606 617 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms