RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 NUTM2BA6NNL0 878 aaPredicted RBP19.16■□□□□ 0.66
CXCL12-201ENST00000343575 NUTM2EB1AL46 878 aaPredicted RBP19.16■□□□□ 0.66
CXCL12-201ENST00000343575 NUTM2AQ8IVF1 878 aaPredicted RBP19.16■□□□□ 0.66
CXCL12-201ENST00000343575 MCM10Q7L590 875 aa19.15■□□□□ 0.66
CXCL12-201ENST00000343575 STRN4Q9NRL3 753 aa19.15■□□□□ 0.66
CXCL12-201ENST00000343575 LMOD3Q0VAK6 560 aa19.14■□□□□ 0.65
CXCL12-201ENST00000343575 ZNF853P0CG23 659 aa19.14■□□□□ 0.65
CXCL12-201ENST00000343575 TOM1L2Q6ZVM7 507 aa19.14■□□□□ 0.65
CXCL12-201ENST00000343575 FANCIQ9NVI1 1328 aa19.13■□□□□ 0.65
CXCL12-201ENST00000343575 TSR2Q969E8 191 aaKnown RBP19.13■□□□□ 0.65
CXCL12-201ENST00000343575 CARD10Q9BWT7 1032 aa19.13■□□□□ 0.65
CXCL12-201ENST00000343575 PLCH1Q4KWH8 1693 aa19.13■□□□□ 0.65
CXCL12-201ENST00000343575 CRB1P82279 1406 aa19.12■□□□□ 0.65
CXCL12-201ENST00000343575 GNAT3A8MTJ3 354 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 EVA1CP58658 441 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 AMOTQ4VCS5 1084 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 PLEKHO1Q53GL0 409 aaPredicted RBP19.11■□□□□ 0.65
CXCL12-201ENST00000343575 IL17REQ8NFR9 667 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 MAP3K5Q99683 1374 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 HTATSF1O43719 755 aaKnown RBP19.11■□□□□ 0.65
CXCL12-201ENST00000343575 RAPGEF4Q8WZA2 1011 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 RNF123Q5XPI4 1314 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 LRP6O75581 1613 aa19.11■□□□□ 0.65
CXCL12-201ENST00000343575 SLIT2O94813 1529 aa19.1■□□□□ 0.65
CXCL12-201ENST00000343575 MYH16Q9H6N6 1097 aa19.1■□□□□ 0.65
CXCL12-201ENST00000343575 RCAN3Q9UKA8 241 aa19.1■□□□□ 0.65
CXCL12-201ENST00000343575 ZNF530Q6P9A1 599 aaPredicted RBP19.09■□□□□ 0.65
CXCL12-201ENST00000343575 IFT57Q9NWB7 429 aa19.09■□□□□ 0.65
CXCL12-201ENST00000343575 NRAPQ86VF7 1730 aa19.09■□□□□ 0.65
CXCL12-201ENST00000343575 TATP17735 454 aaPredicted RBP19.09■□□□□ 0.65
CXCL12-201ENST00000343575 CFAP44Q96MT7 982 aa19.09■□□□□ 0.65
CXCL12-201ENST00000343575 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.09■□□□□ 0.65
CXCL12-201ENST00000343575 SPATA31A6Q5VVP1 1343 aa19.09■□□□□ 0.65
CXCL12-201ENST00000343575 PLEKHG2Q9H7P9 1386 aa19.09■□□□□ 0.65
CXCL12-201ENST00000343575 LRRC37A3O60309 1634 aa19.08■□□□□ 0.65
CXCL12-201ENST00000343575 CEMIPQ8WUJ3 1361 aa19.08■□□□□ 0.64
CXCL12-201ENST00000343575 OVOS2A0A0G2JMS6 1433 aa19.08■□□□□ 0.64
CXCL12-201ENST00000343575 PKD1L3Q7Z443 1732 aa19.08■□□□□ 0.64
CXCL12-201ENST00000343575 CALD1Q05682 793 aaKnown RBP19.07■□□□□ 0.64
CXCL12-201ENST00000343575 AKAP4Q5JQC9 854 aa19.07■□□□□ 0.64
CXCL12-201ENST00000343575 LGR6Q9HBX8 967 aa19.07■□□□□ 0.64
CXCL12-201ENST00000343575 MBIPQ9NS73 344 aa19.07■□□□□ 0.64
CXCL12-201ENST00000343575 CHL1O00533 1208 aa19.07■□□□□ 0.64
CXCL12-201ENST00000343575 GNAI1P63096 354 aa19.07■□□□□ 0.64
CXCL12-201ENST00000343575 RTF1Q92541 710 aaKnown RBP19.07■□□□□ 0.64
CXCL12-201ENST00000343575 LAS1LQ9Y4W2 734 aaKnown RBP19.07■□□□□ 0.64
CXCL12-201ENST00000343575 USP35Q9P2H5 1018 aa19.06■□□□□ 0.64
CXCL12-201ENST00000343575 NWD2Q9ULI1 1742 aa19.05■□□□□ 0.64
CXCL12-201ENST00000343575 CYP27B1O15528 508 aa19.05■□□□□ 0.64
CXCL12-201ENST00000343575 EXOSC9Q06265 439 aaKnown RBP19.05■□□□□ 0.64
CXCL12-201ENST00000343575 IL2RBP14784 551 aa19.05■□□□□ 0.64
CXCL12-201ENST00000343575 ADAMTS7Q9UKP4 1686 aa19.04■□□□□ 0.64
CXCL12-201ENST00000343575 MPRIPQ6WCQ1 1025 aa19.04■□□□□ 0.64
CXCL12-201ENST00000343575 PARP4Q9UKK3 1724 aaKnown RBP19.04■□□□□ 0.64
CXCL12-201ENST00000343575 BCL9LQ86UU0 1499 aa19.04■□□□□ 0.64
CXCL12-201ENST00000343575 DISP2A7MBM2 1401 aa19.04■□□□□ 0.64
CXCL12-201ENST00000343575 PHKG2P15735 406 aa19.03■□□□□ 0.64
CXCL12-201ENST00000343575 MIS18AQ9NYP9 233 aa19.03■□□□□ 0.64
CXCL12-201ENST00000343575 SPG7Q9UQ90 795 aa19.03■□□□□ 0.64
CXCL12-201ENST00000343575 RNMTO43148 476 aaKnown RBP19.03■□□□□ 0.64
CXCL12-201ENST00000343575 SHANK3Q9BYB0 1731 aa19.02■□□□□ 0.64
CXCL12-201ENST00000343575 VIRMAQ69YN4 1812 aaKnown RBP19.02■□□□□ 0.64
CXCL12-201ENST00000343575 C1orf141Q5JVX7 400 aa19.02■□□□□ 0.64
CXCL12-201ENST00000343575 FNBP4Q8N3X1 1017 aaPredicted RBP19.02■□□□□ 0.64
CXCL12-201ENST00000343575 C8orf37Q96NL8 207 aa19.02■□□□□ 0.64
CXCL12-201ENST00000343575 SPATA31A1Q5TZJ5 1347 aa19.02■□□□□ 0.63
CXCL12-201ENST00000343575 KDM6AO15550 1401 aaPredicted RBP19.01■□□□□ 0.63
CXCL12-201ENST00000343575 ZCRB1Q8TBF4 217 aaKnown RBP19.01■□□□□ 0.63
CXCL12-201ENST00000343575 TSPYL6Q8N831 410 aa19.01■□□□□ 0.63
CXCL12-201ENST00000343575 BCAR3O75815 825 aa19■□□□□ 0.63
CXCL12-201ENST00000343575 UNC5CLQ8IV45 518 aa19■□□□□ 0.63
CXCL12-201ENST00000343575 NGLY1Q96IV0 654 aa19■□□□□ 0.63
CXCL12-201ENST00000343575 SPATA31A5Q5VU36 1347 aa19■□□□□ 0.63
CXCL12-201ENST00000343575 SPATA31A7Q8IWB4 1347 aa19■□□□□ 0.63
CXCL12-201ENST00000343575 RARSP54136 660 aaKnown RBP18.99■□□□□ 0.63
CXCL12-201ENST00000343575 RRP1P56182 461 aaKnown RBP18.99■□□□□ 0.63
CXCL12-201ENST00000343575 IRX6P78412 446 aaPredicted RBP18.99■□□□□ 0.63
CXCL12-201ENST00000343575 IFNL2Q8IZJ0 200 aa18.99■□□□□ 0.63
CXCL12-201ENST00000343575 C8orf58Q8NAV2 365 aa18.99■□□□□ 0.63
CXCL12-201ENST00000343575 TAF7Q15545 349 aaPredicted RBP18.99■□□□□ 0.63
CXCL12-201ENST00000343575 KRT24Q2M2I5 525 aa18.99■□□□□ 0.63
CXCL12-201ENST00000343575 SCN11AQ9UI33 1791 aa18.98■□□□□ 0.63
CXCL12-201ENST00000343575 CT47B1P0C2W7 299 aaPredicted RBP18.98■□□□□ 0.63
CXCL12-201ENST00000343575 PLIN1O60240 522 aa18.97■□□□□ 0.63
CXCL12-201ENST00000343575 VAMP4O75379 141 aa18.97■□□□□ 0.63
CXCL12-201ENST00000343575 WNK3Q9BYP7 1800 aa18.97■□□□□ 0.63
CXCL12-201ENST00000343575 PCDH11XQ9BZA7 1347 aa18.96■□□□□ 0.63
CXCL12-201ENST00000343575 PCDH11YQ9BZA8 1340 aa18.96■□□□□ 0.63
CXCL12-201ENST00000343575 SIPA1L3O60292 1781 aaPredicted RBP18.96■□□□□ 0.63
CXCL12-201ENST00000343575 TSPYL4Q9UJ04 414 aa18.96■□□□□ 0.63
CXCL12-201ENST00000343575 ELL2O00472 640 aaPredicted RBP18.95■□□□□ 0.62
CXCL12-201ENST00000343575 NKX1-1Q15270 411 aaPredicted RBP18.95■□□□□ 0.62
CXCL12-201ENST00000343575 BABAM1Q9NWV8 329 aa18.95■□□□□ 0.62
CXCL12-201ENST00000343575 VPS72Q15906 364 aa18.94■□□□□ 0.62
CXCL12-201ENST00000343575 ERICH6Q7L0X2 663 aa18.94■□□□□ 0.62
CXCL12-201ENST00000343575 DCAF5Q96JK2 942 aa18.94■□□□□ 0.62
CXCL12-201ENST00000343575 THRAP3Q9Y2W1 955 aaKnown RBP18.94■□□□□ 0.62
CXCL12-201ENST00000343575 BCL2L13Q9BXK5 485 aa18.94■□□□□ 0.62
CXCL12-201ENST00000343575 KCNQ3O43525 872 aa18.93■□□□□ 0.62
CXCL12-201ENST00000343575 TEFQ10587 303 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms