RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TRIM6-TRIM34B2RNG4 842 aa10.26□□□□□ -0.77
HMGB1-203ENST00000341423 POLR3DP05423 398 aaPredicted RBP10.26□□□□□ -0.77
HMGB1-203ENST00000341423 NACAP1Q9BZK3 213 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 NIP7Q9Y221 180 aaKnown RBP eCLIP10.25□□□□□ -0.77
HMGB1-203ENST00000341423 USP5P45974 858 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 FAM200AQ8TCP9 573 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 LRP2BPQ9P2M1 347 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 SPOUT1Q5T280 376 aaKnown RBP10.25□□□□□ -0.77
HMGB1-203ENST00000341423 CCDC30Q5VVM6 783 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 DPP8Q6V1X1 898 aaPredicted RBP10.25□□□□□ -0.77
HMGB1-203ENST00000341423 ABCF2Q9UG63 623 aa10.25□□□□□ -0.77
HMGB1-203ENST00000341423 UBXN2AP68543 259 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 SULT6B1Q6IMI4 303 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 ELMSAN1Q6PJG2 1045 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 LRSAM1Q6UWE0 723 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 NFXL1Q6ZNB6 911 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 PPP2R3CQ969Q6 453 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 ERBINQ96RT1 1412 aa10.24□□□□□ -0.77
HMGB1-203ENST00000341423 EIF4G3O43432 1585 aaKnown RBP10.24□□□□□ -0.77
HMGB1-203ENST00000341423 DHX29Q7Z478 1369 aaKnown RBP10.24□□□□□ -0.77
HMGB1-203ENST00000341423 PLS1Q14651 629 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 TAF12Q16514 161 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 CEP126Q9P2H0 1117 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 GPTP24298 496 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 IRX3P78415 501 aaPredicted RBP10.23□□□□□ -0.77
HMGB1-203ENST00000341423 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.23□□□□□ -0.77
HMGB1-203ENST00000341423 HDGFL1Q5TGJ6 251 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 HINFPQ9BQA5 517 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 SIRT1Q96EB6 747 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 SLC16A10Q8TF71 515 aa10.23□□□□□ -0.77
HMGB1-203ENST00000341423 NFE2L2Q16236 605 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 SPTY2D1Q68D10 685 aaPredicted RBP10.22□□□□□ -0.77
HMGB1-203ENST00000341423 TTC39AQ5SRH9 613 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 ITPRIPQ8IWB1 547 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 CCDC47Q96A33 483 aaKnown RBP10.22□□□□□ -0.77
HMGB1-203ENST00000341423 USP48Q86UV5 1035 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 KCNQ2O43526 872 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 ABCC2Q92887 1545 aa10.22□□□□□ -0.77
HMGB1-203ENST00000341423 ZNF76P36508 570 aa10.21□□□□□ -0.77
HMGB1-203ENST00000341423 GNAI1P63096 354 aa10.21□□□□□ -0.77
HMGB1-203ENST00000341423 DNAJC2Q99543 621 aaKnown RBP10.21□□□□□ -0.77
HMGB1-203ENST00000341423 RIMBP2O15034 1052 aa10.21□□□□□ -0.77
HMGB1-203ENST00000341423 ANKRD18AQ8IVF6 992 aa10.21□□□□□ -0.77
HMGB1-203ENST00000341423 BAG3O95817 575 aa10.21□□□□□ -0.78
HMGB1-203ENST00000341423 ZNF804AQ7Z570 1209 aa10.21□□□□□ -0.78
HMGB1-203ENST00000341423 RALYLQ86SE5 291 aaKnown RBP10.21□□□□□ -0.78
HMGB1-203ENST00000341423 NSD3Q9BZ95 1437 aa10.21□□□□□ -0.78
HMGB1-203ENST00000341423 E9PSI1 815 aa10.21□□□□□ -0.78
HMGB1-203ENST00000341423 STK24Q9Y6E0 443 aa10.21□□□□□ -0.78
HMGB1-203ENST00000341423 TRIM29Q14134 588 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 RIMS2Q9UQ26 1411 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 PRIM1P49642 420 aaKnown RBP10.2□□□□□ -0.78
HMGB1-203ENST00000341423 SUPT20HL1Q3ZLR7 823 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 DCAF15Q66K64 600 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 CCDC85AQ96PX6 553 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-203ENST00000341423 ZBED2Q9BTP6 218 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 TAOK3Q9H2K8 898 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 SLC10A4Q96EP9 437 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 ORAI2Q96SN7 254 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 F8W031 263 aaPredicted RBP10.2□□□□□ -0.78
HMGB1-203ENST00000341423 TTLL6Q8N841 843 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 PCDH11XQ9BZA7 1347 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 PCDH11YQ9BZA8 1340 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 EHMT1Q9H9B1 1298 aa10.2□□□□□ -0.78
HMGB1-203ENST00000341423 URB2Q14146 1524 aaKnown RBP10.19□□□□□ -0.78
HMGB1-203ENST00000341423 HTATSF1O43719 755 aaKnown RBP10.19□□□□□ -0.78
HMGB1-203ENST00000341423 CCDC93Q567U6 631 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 SLKQ9H2G2 1235 aaPredicted RBP10.19□□□□□ -0.78
HMGB1-203ENST00000341423 ABCC10Q5T3U5 1492 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 METTL24Q5JXM2 366 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 SMC1BQ8NDV3 1235 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 CC2D2BQ6DHV5 1058 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 SIN3AQ96ST3 1273 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 GCP02774 474 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 MFAP1P55081 439 aaKnown RBP10.19□□□□□ -0.78
HMGB1-203ENST00000341423 RIPK4P57078 832 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 AKAP4Q5JQC9 854 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 DEFB132Q7Z7B7 95 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 UIMC1Q96RL1 719 aa10.19□□□□□ -0.78
HMGB1-203ENST00000341423 DLGAP5Q15398 846 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 FAM182BQ5T319 152 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 L1TD1Q5T7N2 865 aaKnown RBP10.18□□□□□ -0.78
HMGB1-203ENST00000341423 A2MP01023 1474 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 ZSCAN25Q6NSZ9 544 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 ANKRD18BA2A2Z9 1011 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 TRAF1Q13077 416 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 TNPO1Q92973 898 aaKnown RBP10.18□□□□□ -0.78
HMGB1-203ENST00000341423 GSTO1P78417 241 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 IFIT5Q13325 482 aaKnown RBP10.18□□□□□ -0.78
HMGB1-203ENST00000341423 KCNH4Q9UQ05 1017 aa10.18□□□□□ -0.78
HMGB1-203ENST00000341423 CPLX1O14810 134 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 PDE4CQ08493 712 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 BIRC2Q13490 618 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 DZIP3Q86Y13 1208 aaKnown RBP10.17□□□□□ -0.78
HMGB1-203ENST00000341423 ZGPATQ8N5A5 531 aaKnown RBP10.17□□□□□ -0.78
HMGB1-203ENST00000341423 USHBP1Q8N6Y0 703 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 BRD4O60885 1362 aaPredicted RBP10.17□□□□□ -0.78
HMGB1-203ENST00000341423 VEGFAP15692 232 aaPredicted RBP10.17□□□□□ -0.78
HMGB1-203ENST00000341423 PPP4R3BQ5MIZ7 849 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 RAET1EQ8TD07 263 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms