RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 TERF2IPQ9NYB0 399 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 FYB1O15117 783 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 CFAP44Q96MT7 982 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 ZNF500O60304 480 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-201ENST00000334258 GTF2E1P29083 439 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-201ENST00000334258 ZNF428Q96B54 188 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 A2ML1A8K2U0 1454 aa16.81■□□□□ 0.28
SYNE3-201ENST00000334258 TNRQ92752 1358 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 GPT2Q8TD30 523 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 USP26Q9BXU7 913 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 IFT172Q9UG01 1749 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 A0A1W2PP64 1363 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 CCDC39Q9UFE4 941 aa16.8■□□□□ 0.28
SYNE3-201ENST00000334258 FCHSD2O94868 740 aa16.79■□□□□ 0.28
SYNE3-201ENST00000334258 TMEM131LA2VDJ0 1609 aa16.79■□□□□ 0.28
SYNE3-201ENST00000334258 TWISTNBQ3B726 338 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-201ENST00000334258 TTC22Q5TAA0 569 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 ARHGAP45Q92619 1136 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 PDLIM2Q96JY6 352 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 ATAD2Q6PL18 1390 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 FOXD4L6Q3SYB3 417 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-201ENST00000334258 FOXD4L3Q6VB84 417 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-201ENST00000334258 MPNDQ8N594 471 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.78■□□□□ 0.28
SYNE3-201ENST00000334258 TMEM63CQ9P1W3 806 aa16.78■□□□□ 0.28
SYNE3-201ENST00000334258 OTUD7AQ8TE49 926 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-201ENST00000334258 TPRNQ4KMQ1 711 aa16.77■□□□□ 0.28
SYNE3-201ENST00000334258 LRSAM1Q6UWE0 723 aa16.77■□□□□ 0.28
SYNE3-201ENST00000334258 API5Q9BZZ5 524 aaKnown RBP16.77■□□□□ 0.28
SYNE3-201ENST00000334258 AK9Q5TCS8 1911 aa16.77■□□□□ 0.28
SYNE3-201ENST00000334258 NOL8Q76FK4 1167 aaKnown RBP16.77■□□□□ 0.27
SYNE3-201ENST00000334258 PHACTR3Q96KR7 559 aa16.77■□□□□ 0.27
SYNE3-201ENST00000334258 QRICH2Q9H0J4 1663 aa16.76■□□□□ 0.27
SYNE3-201ENST00000334258 CYP2E1P05181 493 aaPredicted RBP16.76■□□□□ 0.27
SYNE3-201ENST00000334258 GNAI1P63096 354 aa16.76■□□□□ 0.27
SYNE3-201ENST00000334258 HDGFL2Q7Z4V5 671 aaPredicted RBP16.76■□□□□ 0.27
SYNE3-201ENST00000334258 NME9Q86XW9 330 aa16.76■□□□□ 0.27
SYNE3-201ENST00000334258 TULP4Q9NRJ4 1543 aa16.76■□□□□ 0.27
SYNE3-201ENST00000334258 SMARCA5O60264 1052 aaPredicted RBP16.76■□□□□ 0.27
SYNE3-201ENST00000334258 PUS7Q96PZ0 661 aaKnown RBP16.76■□□□□ 0.27
SYNE3-201ENST00000334258 PRDM10Q9NQV6 1147 aa16.76■□□□□ 0.27
SYNE3-201ENST00000334258 ADGRB2O60241 1585 aa16.75■□□□□ 0.27
SYNE3-201ENST00000334258 REC8O95072 547 aa16.75■□□□□ 0.27
SYNE3-201ENST00000334258 SDSP20132 328 aa16.75■□□□□ 0.27
SYNE3-201ENST00000334258 NSFL1CQ9UNZ2 370 aaKnown RBP16.75■□□□□ 0.27
SYNE3-201ENST00000334258 DYNC1I1O14576 645 aa16.75■□□□□ 0.27
SYNE3-201ENST00000334258 MBIPQ9NS73 344 aa16.75■□□□□ 0.27
SYNE3-201ENST00000334258 MCM5P33992 734 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 NEK4P51957 841 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 NFE2L2Q16236 605 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 NUTM2GQ5VZR2 741 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 SASS6Q6UVJ0 657 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 BRPF1P55201 1214 aaPredicted RBP16.74■□□□□ 0.27
SYNE3-201ENST00000334258 MTERF4Q7Z6M4 381 aaKnown RBP16.74■□□□□ 0.27
SYNE3-201ENST00000334258 DCTPP1Q9H773 170 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 PPP6R1Q9UPN7 881 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 RRS1Q15050 365 aaKnown RBP16.74■□□□□ 0.27
SYNE3-201ENST00000334258 ZDHHC9Q9Y397 364 aa16.74■□□□□ 0.27
SYNE3-201ENST00000334258 ALKQ9UM73 1620 aa16.73■□□□□ 0.27
SYNE3-201ENST00000334258 C8orf58Q8NAV2 365 aa16.73■□□□□ 0.27
SYNE3-201ENST00000334258 NUDT16Q96DE0 195 aaKnown RBP16.73■□□□□ 0.27
SYNE3-201ENST00000334258 MBD3O95983 291 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 EID1Q9Y6B2 187 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 PTPRMP28827 1452 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 PLCD3Q8N3E9 789 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 ARHGEF40Q8TER5 1519 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 ABCC4O15439 1325 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 KIAA2012Q0VF49 1180 aa16.72■□□□□ 0.27
SYNE3-201ENST00000334258 WASLO00401 505 aaPredicted RBP16.71■□□□□ 0.27
SYNE3-201ENST00000334258 TSPY26PQ9H489 355 aa16.71■□□□□ 0.27
SYNE3-201ENST00000334258 MYO3AQ8NEV4 1616 aa16.71■□□□□ 0.27
SYNE3-201ENST00000334258 IFT57Q9NWB7 429 aa16.71■□□□□ 0.27
SYNE3-201ENST00000334258 AMOTL2Q9Y2J4 779 aa16.71■□□□□ 0.27
SYNE3-201ENST00000334258 EMILIN1Q9Y6C2 1016 aa16.71■□□□□ 0.27
SYNE3-201ENST00000334258 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.71■□□□□ 0.26
SYNE3-201ENST00000334258 MED14O60244 1454 aa16.7■□□□□ 0.26
SYNE3-201ENST00000334258 ERC2O15083 957 aa16.7■□□□□ 0.26
SYNE3-201ENST00000334258 SYAP1Q96A49 352 aaPredicted RBP16.7■□□□□ 0.26
SYNE3-201ENST00000334258 TMEM2Q9UHN6 1383 aa16.7■□□□□ 0.26
SYNE3-201ENST00000334258 SETBP1Q9Y6X0 1596 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 HDGFP51858 240 aaKnown RBP16.69■□□□□ 0.26
SYNE3-201ENST00000334258 DCTN1Q14203 1278 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 TMX3Q96JJ7 454 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 ROBO2Q9HCK4 1378 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 ZC3H13Q5T200 1668 aaKnown RBP16.69■□□□□ 0.26
SYNE3-201ENST00000334258 PLCB2Q00722 1185 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 GDPD2Q9HCC8 539 aa16.69■□□□□ 0.26
SYNE3-201ENST00000334258 AGLP35573 1532 aa16.68■□□□□ 0.26
SYNE3-201ENST00000334258 FAM83GA6ND36 823 aa16.68■□□□□ 0.26
SYNE3-201ENST00000334258 C14orf37Q86TY3 774 aa16.68■□□□□ 0.26
SYNE3-201ENST00000334258 ZNF830Q96NB3 372 aaPredicted RBP16.68■□□□□ 0.26
SYNE3-201ENST00000334258 VGLL3A8MV65 326 aa16.68■□□□□ 0.26
SYNE3-201ENST00000334258 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.68■□□□□ 0.26
SYNE3-201ENST00000334258 NEURL4Q96JN8 1562 aa16.68■□□□□ 0.26
SYNE3-201ENST00000334258 POLKQ9UBT6 870 aa16.67■□□□□ 0.26
SYNE3-201ENST00000334258 ARHGEF28Q8N1W1 1705 aaKnown RBP16.67■□□□□ 0.26
SYNE3-201ENST00000334258 PTCH1Q13635 1447 aa16.67■□□□□ 0.26
SYNE3-201ENST00000334258 ANKRD44Q8N8A2 993 aa16.67■□□□□ 0.26
SYNE3-201ENST00000334258 TSC1Q92574 1164 aa16.67■□□□□ 0.26
SYNE3-201ENST00000334258 PIK3R4Q99570 1358 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms