RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 PLEKHG5O94827 1062 aa21.73■■□□□ 1.07
DDX41-201ENST00000330503 TWISTNBQ3B726 338 aaPredicted RBP21.73■■□□□ 1.07
DDX41-201ENST00000330503 NBPF6Q5VWK0 638 aa21.73■■□□□ 1.07
DDX41-201ENST00000330503 USHBP1Q8N6Y0 703 aa21.73■■□□□ 1.07
DDX41-201ENST00000330503 NBPF4Q96M43 638 aa21.73■■□□□ 1.07
DDX41-201ENST00000330503 ALS2Q96Q42 1657 aa21.73■■□□□ 1.07
DDX41-201ENST00000330503 MSH6P52701 1360 aa21.72■■□□□ 1.07
DDX41-201ENST00000330503 KIF16BQ96L93 1317 aa21.71■■□□□ 1.07
DDX41-201ENST00000330503 IPO8O15397 1037 aaKnown RBP21.71■■□□□ 1.07
DDX41-201ENST00000330503 FTSJ3Q8IY81 847 aaKnown RBP21.71■■□□□ 1.07
DDX41-201ENST00000330503 HTATSF1O43719 755 aaKnown RBP21.71■■□□□ 1.07
DDX41-201ENST00000330503 RTF1Q92541 710 aaKnown RBP21.7■■□□□ 1.06
DDX41-201ENST00000330503 PCDHB15Q9Y5E8 787 aa21.7■■□□□ 1.06
DDX41-201ENST00000330503 MED1Q15648 1581 aaPredicted RBP21.69■■□□□ 1.06
DDX41-201ENST00000330503 ZNF335Q9H4Z2 1342 aaPredicted RBP21.69■■□□□ 1.06
DDX41-201ENST00000330503 KRT24Q2M2I5 525 aa21.68■■□□□ 1.06
DDX41-201ENST00000330503 RGPD2P0DJD1 1756 aa21.68■■□□□ 1.06
DDX41-201ENST00000330503 LRRC59Q96AG4 307 aaKnown RBP21.68■■□□□ 1.06
DDX41-201ENST00000330503 MIS18AQ9NYP9 233 aa21.68■■□□□ 1.06
DDX41-201ENST00000330503 AXIN2Q9Y2T1 843 aa21.68■■□□□ 1.06
DDX41-201ENST00000330503 GNAT3A8MTJ3 354 aa21.67■■□□□ 1.06
DDX41-201ENST00000330503 TMEM57Q8N5G2 664 aa21.67■■□□□ 1.06
DDX41-201ENST00000330503 NPHP3Q7Z494 1330 aa21.67■■□□□ 1.06
DDX41-201ENST00000330503 ARHGAP45Q92619 1136 aa21.67■■□□□ 1.06
DDX41-201ENST00000330503 KIAA0232Q92628 1395 aa21.66■■□□□ 1.06
DDX41-201ENST00000330503 IL17REQ8NFR9 667 aa21.66■■□□□ 1.06
DDX41-201ENST00000330503 PXDNQ92626 1479 aa21.65■■□□□ 1.06
DDX41-201ENST00000330503 ANKRD24Q8TF21 1146 aa21.65■■□□□ 1.06
DDX41-201ENST00000330503 MAP3K5Q99683 1374 aa21.64■■□□□ 1.06
DDX41-201ENST00000330503 ZC3H6P61129 1189 aaKnown RBP21.64■■□□□ 1.06
DDX41-201ENST00000330503 ITPRIPQ8IWB1 547 aa21.64■■□□□ 1.06
DDX41-201ENST00000330503 DDX19BQ9UMR2 479 aa21.64■■□□□ 1.06
DDX41-201ENST00000330503 BRINP3Q76B58 766 aa21.64■■□□□ 1.05
DDX41-201ENST00000330503 NCAPD2Q15021 1401 aa21.63■■□□□ 1.05
DDX41-201ENST00000330503 LRRC37A3O60309 1634 aa21.63■■□□□ 1.05
DDX41-201ENST00000330503 TSPYL4Q9UJ04 414 aa21.62■■□□□ 1.05
DDX41-201ENST00000330503 SPATA31A3Q5VYP0 1347 aa21.62■■□□□ 1.05
DDX41-201ENST00000330503 TNS3Q68CZ2 1445 aa21.61■■□□□ 1.05
DDX41-201ENST00000330503 ZBTB40Q9NUA8 1239 aa21.61■■□□□ 1.05
DDX41-201ENST00000330503 RGPD5Q99666 1765 aa21.6■■□□□ 1.05
DDX41-201ENST00000330503 CABLES1Q8TDN4 633 aa21.6■■□□□ 1.05
DDX41-201ENST00000330503 PDE4AP27815 886 aa21.59■■□□□ 1.05
DDX41-201ENST00000330503 SLAIN2Q9P270 581 aa21.59■■□□□ 1.05
DDX41-201ENST00000330503 HAP1P54257 671 aaPredicted RBP21.58■■□□□ 1.05
DDX41-201ENST00000330503 RWDD1Q9H446 243 aaPredicted RBP21.58■■□□□ 1.05
DDX41-201ENST00000330503 ABCC4O15439 1325 aa21.58■■□□□ 1.04
DDX41-201ENST00000330503 CAMTA1Q9Y6Y1 1673 aa21.58■■□□□ 1.04
DDX41-201ENST00000330503 TAF7Q15545 349 aaPredicted RBP21.57■■□□□ 1.04
DDX41-201ENST00000330503 BACH2Q9BYV9 841 aa21.57■■□□□ 1.04
DDX41-201ENST00000330503 COL18A1P39060 1754 aa21.57■■□□□ 1.04
DDX41-201ENST00000330503 PLEKHO1Q53GL0 409 aaPredicted RBP21.56■■□□□ 1.04
DDX41-201ENST00000330503 CEMIPQ8WUJ3 1361 aa21.56■■□□□ 1.04
DDX41-201ENST00000330503 ERBB3P21860 1342 aa21.56■■□□□ 1.04
DDX41-201ENST00000330503 API5Q9BZZ5 524 aaKnown RBP21.56■■□□□ 1.04
DDX41-201ENST00000330503 LGR6Q9HBX8 967 aa21.56■■□□□ 1.04
DDX41-201ENST00000330503 BABAM1Q9NWV8 329 aa21.56■■□□□ 1.04
DDX41-201ENST00000330503 ZBTB7BO15156 539 aaPredicted RBP21.55■■□□□ 1.04
DDX41-201ENST00000330503 CRYBG1Q9Y4K1 1723 aa21.55■■□□□ 1.04
DDX41-201ENST00000330503 RGS3P49796 1198 aa21.54■■□□□ 1.04
DDX41-201ENST00000330503 AMOTQ4VCS5 1084 aa21.54■■□□□ 1.04
DDX41-201ENST00000330503 HDAC1Q13547 482 aaPredicted RBP21.53■■□□□ 1.04
DDX41-201ENST00000330503 AKAP4Q5JQC9 854 aa21.53■■□□□ 1.04
DDX41-201ENST00000330503 ZNF530Q6P9A1 599 aaPredicted RBP21.53■■□□□ 1.04
DDX41-201ENST00000330503 SOS2Q07890 1332 aaPredicted RBP21.53■■□□□ 1.04
DDX41-201ENST00000330503 LMO7Q8WWI1 1683 aa21.53■■□□□ 1.04
DDX41-201ENST00000330503 RGS12O14924 1447 aa21.52■■□□□ 1.04
DDX41-201ENST00000330503 SLC4A2P04920 1241 aa21.51■■□□□ 1.03
DDX41-201ENST00000330503 CHRNA2Q15822 529 aa21.51■■□□□ 1.03
DDX41-201ENST00000330503 PDZRN3Q9UPQ7 1066 aa21.5■■□□□ 1.03
DDX41-201ENST00000330503 CPDO75976 1380 aa21.49■■□□□ 1.03
DDX41-201ENST00000330503 MPRIPQ6WCQ1 1025 aa21.49■■□□□ 1.03
DDX41-201ENST00000330503 G2E3Q7L622 706 aa21.49■■□□□ 1.03
DDX41-201ENST00000330503 NLRP2Q9NX02 1062 aa21.49■■□□□ 1.03
DDX41-201ENST00000330503 INTS3Q68E01 1043 aaKnown RBP21.48■■□□□ 1.03
DDX41-201ENST00000330503 PTPRCP08575 1304 aa21.48■■□□□ 1.03
DDX41-201ENST00000330503 RNMTO43148 476 aaKnown RBP21.47■■□□□ 1.03
DDX41-201ENST00000330503 CHMP4BQ9H444 224 aaKnown RBP21.47■■□□□ 1.03
DDX41-201ENST00000330503 ABCC6O95255 1503 aa21.47■■□□□ 1.03
DDX41-201ENST00000330503 FAM208AQ9UK61 1670 aaKnown RBP21.46■■□□□ 1.03
DDX41-201ENST00000330503 SOS1Q07889 1333 aaPredicted RBP21.46■■□□□ 1.03
DDX41-201ENST00000330503 C1orf141Q5JVX7 400 aa21.46■■□□□ 1.03
DDX41-201ENST00000330503 SMC5Q8IY18 1101 aa21.44■■□□□ 1.02
DDX41-201ENST00000330503 KCNQ3O43525 872 aa21.44■■□□□ 1.02
DDX41-201ENST00000330503 EIF4A1P60842 406 aaKnown RBP21.44■■□□□ 1.02
DDX41-201ENST00000330503 C8orf34Q49A92 452 aa21.44■■□□□ 1.02
DDX41-201ENST00000330503 CCDC30Q5VVM6 783 aa21.44■■□□□ 1.02
DDX41-201ENST00000330503 C1orf115Q9H7X2 142 aa21.44■■□□□ 1.02
DDX41-201ENST00000330503 FAM161AQ3B820 660 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 KDM3BQ7LBC6 1761 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 MSH5O43196 834 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 CSB-PGBD3P0DP91 1061 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 TEFQ10587 303 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 RAPGEF4Q8WZA2 1011 aa21.43■■□□□ 1.02
DDX41-201ENST00000330503 OVOS2A0A0G2JMS6 1433 aa21.42■■□□□ 1.02
DDX41-201ENST00000330503 SIRT2Q8IXJ6 389 aa21.41■■□□□ 1.02
DDX41-201ENST00000330503 NECTIN2Q92692 538 aa21.41■■□□□ 1.02
DDX41-201ENST00000330503 STK31Q9BXU1 1019 aa21.41■■□□□ 1.02
DDX41-201ENST00000330503 VIRMAQ69YN4 1812 aaKnown RBP21.41■■□□□ 1.02
DDX41-201ENST00000330503 BTBD11A6QL63 1104 aa21.41■■□□□ 1.02
DDX41-201ENST00000330503 TATP17735 454 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms