RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 H3BQV1 296 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 EIF4A2Q14240 407 aaKnown RBP18.38■□□□□ 0.53
VARS2-201ENST00000321897 IFFO2Q5TF58 517 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 FSD1Q9BTV5 496 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 PIK3C2GO75747 1445 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 WDR7Q9Y4E6 1490 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 ZBTB40Q9NUA8 1239 aa18.38■□□□□ 0.53
VARS2-201ENST00000321897 FERMT3Q86UX7 667 aa18.37■□□□□ 0.53
VARS2-201ENST00000321897 NUCB1Q02818 461 aa18.36■□□□□ 0.53
VARS2-201ENST00000321897 G2E3Q7L622 706 aa18.36■□□□□ 0.53
VARS2-201ENST00000321897 FAM184AQ8NB25 1140 aa18.36■□□□□ 0.53
VARS2-201ENST00000321897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.36■□□□□ 0.53
VARS2-201ENST00000321897 SPDYE4A6NLX3 237 aa18.36■□□□□ 0.53
VARS2-201ENST00000321897 PROSER2Q86WR7 435 aaPredicted RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 MRPL50Q8N5N7 158 aaKnown RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 SPG7Q9UQ90 795 aa18.35■□□□□ 0.53
VARS2-201ENST00000321897 FLIIQ13045 1269 aa18.35■□□□□ 0.53
VARS2-201ENST00000321897 ZNF830Q96NB3 372 aaPredicted RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 ERCC6L2Q5T890 1561 aa18.35■□□□□ 0.53
VARS2-201ENST00000321897 GNAT3A8MTJ3 354 aa18.35■□□□□ 0.53
VARS2-201ENST00000321897 CCT4P50991 539 aaKnown RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 MTERF4Q7Z6M4 381 aaKnown RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 RPAP2Q8IXW5 612 aaPredicted RBP18.35■□□□□ 0.53
VARS2-201ENST00000321897 STRN4Q9NRL3 753 aa18.35■□□□□ 0.53
VARS2-201ENST00000321897 BTBD11A6QL63 1104 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 TSPY26PQ9H489 355 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 PTPRTO14522 1441 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 SDSP20132 328 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 STK11IPQ8N1F8 1099 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 EVA1CP58658 441 aa18.34■□□□□ 0.53
VARS2-201ENST00000321897 BICD2Q8TD16 824 aa18.33■□□□□ 0.53
VARS2-201ENST00000321897 CIZ1Q9ULV3 898 aaPredicted RBP18.33■□□□□ 0.53
VARS2-201ENST00000321897 BLMP54132 1417 aaPredicted RBP18.33■□□□□ 0.53
VARS2-201ENST00000321897 SAMD9LQ8IVG5 1584 aa18.33■□□□□ 0.52
VARS2-201ENST00000321897 NRDCO43847 1150 aa18.33■□□□□ 0.52
VARS2-201ENST00000321897 APPP05067 770 aa18.33■□□□□ 0.52
VARS2-201ENST00000321897 THEMISQ8N1K5 641 aaPredicted RBP18.33■□□□□ 0.52
VARS2-201ENST00000321897 MX1P20591 662 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 HDAC1Q13547 482 aaPredicted RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 BMP2KLQ5H9B9 411 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 AACSQ86V21 672 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 CREBRFQ8IUR6 639 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 TCEANC2Q96MN5 208 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 CCDC8Q9H0W5 538 aaPredicted RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 BAG4O95429 457 aaKnown RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 DDX58O95786 925 aaKnown RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 SF3A1Q15459 793 aaKnown RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 MTHFSDQ2M296 383 aaKnown RBP18.32■□□□□ 0.52
VARS2-201ENST00000321897 RUFY2Q8WXA3 655 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 ABCC2Q92887 1545 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 ZMYM4Q5VZL5 1548 aa18.32■□□□□ 0.52
VARS2-201ENST00000321897 PTCD1O75127 700 aaKnown RBP18.31■□□□□ 0.52
VARS2-201ENST00000321897 CNTROBQ8N137 903 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 CHAMP1Q96JM3 812 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 ABCC11Q96J66 1382 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 PI4KAP2A4QPH2 592 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 PI4KAP1Q8N8J0 262 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 LRRC59Q96AG4 307 aaKnown RBP18.31■□□□□ 0.52
VARS2-201ENST00000321897 LRRIQ1Q96JM4 1722 aa18.31■□□□□ 0.52
VARS2-201ENST00000321897 ATP10AO60312 1499 aa18.3■□□□□ 0.52
VARS2-201ENST00000321897 BOLA2Q9H3K6 86 aa18.3■□□□□ 0.52
VARS2-201ENST00000321897 TTC21BQ7Z4L5 1316 aa18.3■□□□□ 0.52
VARS2-201ENST00000321897 ZNF521Q96K83 1311 aa18.3■□□□□ 0.52
VARS2-201ENST00000321897 PPIP5K1Q6PFW1 1433 aa18.29■□□□□ 0.52
VARS2-201ENST00000321897 ZGPATQ8N5A5 531 aaKnown RBP18.29■□□□□ 0.52
VARS2-201ENST00000321897 PLEKHO1Q53GL0 409 aaPredicted RBP18.29■□□□□ 0.52
VARS2-201ENST00000321897 SMC5Q8IY18 1101 aa18.29■□□□□ 0.52
VARS2-201ENST00000321897 USP25Q9UHP3 1055 aa18.29■□□□□ 0.52
VARS2-201ENST00000321897 ZBTB7BO15156 539 aaPredicted RBP18.29■□□□□ 0.52
VARS2-201ENST00000321897 TTC37Q6PGP7 1564 aa18.29■□□□□ 0.52
VARS2-201ENST00000321897 KAT6BQ8WYB5 2073 aa18.29■□□□□ 0.52
VARS2-201ENST00000321897 TRERF1Q96PN7 1200 aa18.28■□□□□ 0.52
VARS2-201ENST00000321897 WASHC4Q2M389 1173 aa18.28■□□□□ 0.52
VARS2-201ENST00000321897 CCAR2Q8N163 923 aaKnown RBP18.28■□□□□ 0.52
VARS2-201ENST00000321897 JAKMIP1Q96N16 626 aaKnown RBP18.28■□□□□ 0.52
VARS2-201ENST00000321897 MBD3O95983 291 aa18.28■□□□□ 0.52
VARS2-201ENST00000321897 NPATQ14207 1427 aa18.28■□□□□ 0.52
VARS2-201ENST00000321897 ATF3P18847 181 aa18.28■□□□□ 0.52
VARS2-201ENST00000321897 ZNF518AQ6AHZ1 1483 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 TSC1Q92574 1164 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 CHMP4CQ96CF2 233 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 HDAC5Q9UQL6 1122 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 GAS2L3Q86XJ1 694 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 CHMP4AQ9BY43 222 aa18.27■□□□□ 0.52
VARS2-201ENST00000321897 ERICH4A6NGS2 130 aa18.27■□□□□ 0.51
VARS2-201ENST00000321897 SLC39A6Q13433 755 aa18.27■□□□□ 0.51
VARS2-201ENST00000321897 PPP1R42Q7Z4L9 355 aa18.27■□□□□ 0.51
VARS2-201ENST00000321897 CGNQ9P2M7 1197 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 PRIM1P49642 420 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 HMGN5P82970 282 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 TTC22Q5TAA0 569 aa18.26■□□□□ 0.51
VARS2-201ENST00000321897 CCDC83Q8IWF9 413 aa18.26■□□□□ 0.51
VARS2-201ENST00000321897 PHAXQ9H814 394 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 KIF3AQ9Y496 699 aa18.26■□□□□ 0.51
VARS2-201ENST00000321897 MAST1Q9Y2H9 1570 aa18.26■□□□□ 0.51
VARS2-201ENST00000321897 CASTP20810 708 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 CHRNA2Q15822 529 aa18.26■□□□□ 0.51
VARS2-201ENST00000321897 PRPF40BQ6NWY9 871 aaKnown RBP18.26■□□□□ 0.51
VARS2-201ENST00000321897 BECN2A8MW95 431 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 SASS6Q6UVJ0 657 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms