RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 PANK3Q9H999 370 aa24.43■■□□□ 1.5
TPM1-203ENST00000317516 PRIM1P49642 420 aaKnown RBP24.42■■□□□ 1.5
TPM1-203ENST00000317516 PPP1R1BQ9UD71 204 aaPredicted RBP24.42■■□□□ 1.5
TPM1-203ENST00000317516 WASHC2AQ641Q2 1341 aa24.41■■□□□ 1.5
TPM1-203ENST00000317516 MEGF6O75095 1541 aa24.4■■□□□ 1.5
TPM1-203ENST00000317516 MYOM1P52179 1685 aa24.4■■□□□ 1.5
TPM1-203ENST00000317516 SLC27A3Q5K4L6 730 aa24.39■■□□□ 1.49
TPM1-203ENST00000317516 POLKQ9UBT6 870 aa24.39■■□□□ 1.49
TPM1-203ENST00000317516 KIF20BQ96Q89 1820 aa24.38■■□□□ 1.49
TPM1-203ENST00000317516 NHSQ6T4R5 1651 aa24.38■■□□□ 1.49
TPM1-203ENST00000317516 TNNT2P45379 298 aaPredicted RBP24.37■■□□□ 1.49
TPM1-203ENST00000317516 PCDH11XQ9BZA7 1347 aa24.36■■□□□ 1.49
TPM1-203ENST00000317516 PCDH11YQ9BZA8 1340 aa24.36■■□□□ 1.49
TPM1-203ENST00000317516 ZBTB7AO95365 584 aa24.34■■□□□ 1.49
TPM1-203ENST00000317516 KNSTRNQ9Y448 316 aa24.34■■□□□ 1.49
TPM1-203ENST00000317516 PDGFDQ9GZP0 370 aaPredicted RBP24.33■■□□□ 1.49
TPM1-203ENST00000317516 LRRC4BQ9NT99 713 aa24.33■■□□□ 1.49
TPM1-203ENST00000317516 SPG7Q9UQ90 795 aa24.33■■□□□ 1.49
TPM1-203ENST00000317516 NSD2O96028 1365 aa24.32■■□□□ 1.48
TPM1-203ENST00000317516 KAT6BQ8WYB5 2073 aa24.32■■□□□ 1.48
TPM1-203ENST00000317516 HMGB2P26583 209 aaKnown RBP24.32■■□□□ 1.48
TPM1-203ENST00000317516 EYA1Q99502 592 aa24.32■■□□□ 1.48
TPM1-203ENST00000317516 MORC1Q86VD1 984 aa24.31■■□□□ 1.48
TPM1-203ENST00000317516 MTFR1LQ9H019 292 aa24.31■■□□□ 1.48
TPM1-203ENST00000317516 ATF5Q9Y2D1 282 aaPredicted RBP24.3■■□□□ 1.48
TPM1-203ENST00000317516 DCAF8L1A6NGE4 600 aa24.29■■□□□ 1.48
TPM1-203ENST00000317516 CYP27B1O15528 508 aa24.29■■□□□ 1.48
TPM1-203ENST00000317516 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.29■■□□□ 1.485e-8■■■■□ 19.9
TPM1-203ENST00000317516 EIF4A2Q14240 407 aaKnown RBP24.28■■□□□ 1.48
TPM1-203ENST00000317516 RGPD2P0DJD1 1756 aa24.28■■□□□ 1.48
TPM1-203ENST00000317516 BTAF1O14981 1849 aa24.27■■□□□ 1.48
TPM1-203ENST00000317516 ZNF827Q17R98 1081 aa24.27■■□□□ 1.48
TPM1-203ENST00000317516 AKT1S1Q96B36 256 aa24.27■■□□□ 1.48
TPM1-203ENST00000317516 CCNL1Q9UK58 526 aaPredicted RBP24.27■■□□□ 1.48
TPM1-203ENST00000317516 MPRIPQ6WCQ1 1025 aa24.26■■□□□ 1.47
TPM1-203ENST00000317516 TFCP2L1Q9NZI6 479 aa24.26■■□□□ 1.47
TPM1-203ENST00000317516 PTGER2P43116 358 aa24.25■■□□□ 1.47
TPM1-203ENST00000317516 NCAPD2Q15021 1401 aa24.25■■□□□ 1.47
TPM1-203ENST00000317516 NKX1-1Q15270 411 aaPredicted RBP24.24■■□□□ 1.47
TPM1-203ENST00000317516 SLC16A10Q8TF71 515 aa24.24■■□□□ 1.47
TPM1-203ENST00000317516 KIF7Q2M1P5 1343 aa24.24■■□□□ 1.47
TPM1-203ENST00000317516 KCNQ4P56696 695 aa24.23■■□□□ 1.47
TPM1-203ENST00000317516 SMARCC1Q92922 1105 aaPredicted RBP24.23■■□□□ 1.47
TPM1-203ENST00000317516 IFNL2Q8IZJ0 200 aa24.22■■□□□ 1.47
TPM1-203ENST00000317516 CASZ1Q86V15 1759 aa24.21■■□□□ 1.47
TPM1-203ENST00000317516 MAP2P11137 1827 aaKnown RBP24.19■■□□□ 1.46
TPM1-203ENST00000317516 PLEKHG2Q9H7P9 1386 aa24.19■■□□□ 1.46
TPM1-203ENST00000317516 IGSF1Q8N6C5 1336 aa24.19■■□□□ 1.46
TPM1-203ENST00000317516 DOT1LQ8TEK3 1739 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 SHANK3Q9BYB0 1731 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 ANKRD26Q9UPS8 1709 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 PAPPAQ13219 1627 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 AMER1Q5JTC6 1135 aaPredicted RBP24.18■■□□□ 1.46
TPM1-203ENST00000317516 ARXQ96QS3 562 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 SGIP1Q9BQI5 828 aa24.18■■□□□ 1.46
TPM1-203ENST00000317516 PALLDQ8WX93 1383 aa24.17■■□□□ 1.46
TPM1-203ENST00000317516 PHKG2P15735 406 aa24.17■■□□□ 1.46
TPM1-203ENST00000317516 PLEKHO1Q53GL0 409 aaPredicted RBP24.17■■□□□ 1.46
TPM1-203ENST00000317516 PIGBQ92521 554 aa24.17■■□□□ 1.46
TPM1-203ENST00000317516 PNPLA7Q6ZV29 1317 aa24.16■■□□□ 1.46
TPM1-203ENST00000317516 POLD1P28340 1107 aa24.16■■□□□ 1.46
TPM1-203ENST00000317516 TMOD3Q9NYL9 352 aa24.16■■□□□ 1.46
TPM1-203ENST00000317516 HSP90AB1P08238 724 aaKnown RBP24.15■■□□□ 1.46
TPM1-203ENST00000317516 AMOTQ4VCS5 1084 aa24.15■■□□□ 1.46
TPM1-203ENST00000317516 MSH5O43196 834 aa24.14■■□□□ 1.45
TPM1-203ENST00000317516 SYT17Q9BSW7 474 aa24.14■■□□□ 1.45
TPM1-203ENST00000317516 FHDC1Q9C0D6 1143 aaPredicted RBP24.14■■□□□ 1.45
TPM1-203ENST00000317516 FLAD1Q8NFF5 587 aa24.13■■□□□ 1.45
TPM1-203ENST00000317516 PER1O15534 1290 aaPredicted RBP24.12■■□□□ 1.45
TPM1-203ENST00000317516 DCAF5Q96JK2 942 aa24.1■■□□□ 1.45
TPM1-203ENST00000317516 PKD1L3Q7Z443 1732 aa24.1■■□□□ 1.45
TPM1-203ENST00000317516 ERVV-2B6SEH9 535 aa24.09■■□□□ 1.45
TPM1-203ENST00000317516 IL13P35225 146 aa24.09■■□□□ 1.45
TPM1-203ENST00000317516 MTHFSP49914 203 aa24.09■■□□□ 1.45
TPM1-203ENST00000317516 SULT6B1Q6IMI4 303 aa24.09■■□□□ 1.45
TPM1-203ENST00000317516 COL23A1Q86Y22 540 aaPredicted RBP24.09■■□□□ 1.45
TPM1-203ENST00000317516 LY75O60449 1722 aa24.08■■□□□ 1.45
TPM1-203ENST00000317516 LOC102724428A0A0B4J2F2 783 aa24.08■■□□□ 1.45
TPM1-203ENST00000317516 SIK1P57059 783 aa24.08■■□□□ 1.45
TPM1-203ENST00000317516 C1orf141Q5JVX7 400 aa24.08■■□□□ 1.45
TPM1-203ENST00000317516 CC2D1BQ5T0F9 858 aaKnown RBP24.08■■□□□ 1.45
TPM1-203ENST00000317516 ZNF530Q6P9A1 599 aaPredicted RBP24.08■■□□□ 1.45
TPM1-203ENST00000317516 AK7Q96M32 723 aa24.08■■□□□ 1.45
TPM1-203ENST00000317516 ASAP1Q9ULH1 1129 aa24.07■■□□□ 1.44
TPM1-203ENST00000317516 AEBP1Q8IUX7 1158 aa24.06■■□□□ 1.44
TPM1-203ENST00000317516 MAP3K5Q99683 1374 aa24.04■■□□□ 1.44
TPM1-203ENST00000317516 YY1P25490 414 aa24.04■■□□□ 1.44
TPM1-203ENST00000317516 CABP4P57796 275 aa24.04■■□□□ 1.44
TPM1-203ENST00000317516 ATG3Q9NT62 314 aa24.04■■□□□ 1.44
TPM1-203ENST00000317516 ATP6V1AP38606 617 aa24.03■■□□□ 1.44
TPM1-203ENST00000317516 KLHL34Q8N239 644 aa24.03■■□□□ 1.44
TPM1-203ENST00000317516 NPC1L1Q9UHC9 1359 aa24.03■■□□□ 1.44
TPM1-203ENST00000317516 KDRP35968 1356 aa24.02■■□□□ 1.44
TPM1-203ENST00000317516 DIAPH1O60610 1272 aaKnown RBP24.01■■□□□ 1.43
TPM1-203ENST00000317516 QSER1Q2KHR3 1735 aa24■■□□□ 1.43
TPM1-203ENST00000317516 CNGB1Q14028 1251 aaPredicted RBP23.99■■□□□ 1.43
TPM1-203ENST00000317516 LINC00116Q8NCU8 138 aa23.99■■□□□ 1.43
TPM1-203ENST00000317516 TOGARAM1Q9Y4F4 1720 aa23.98■■□□□ 1.43
TPM1-203ENST00000317516 SSFA2P28290 1259 aa23.98■■□□□ 1.43
TPM1-203ENST00000317516 RBM42Q9BTD8 480 aaKnown RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms