RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 NEUROD2Q15784 382 aa24.12■■□□□ 1.45
HMGA1-201ENST00000311487 PLEKHF1Q96S99 279 aa24.12■■□□□ 1.45
HMGA1-201ENST00000311487 KDRP35968 1356 aa24.11■■□□□ 1.45
HMGA1-201ENST00000311487 RXRBP28702 533 aa24.1■■□□□ 1.45
HMGA1-201ENST00000311487 FAM182BQ5T319 152 aa24.1■■□□□ 1.45
HMGA1-201ENST00000311487 DDX54Q8TDD1 881 aaKnown RBP24.1■■□□□ 1.45
HMGA1-201ENST00000311487 RBM6P78332 1123 aaKnown RBP24.09■■□□□ 1.45
HMGA1-201ENST00000311487 THRAP3Q9Y2W1 955 aaKnown RBP24.09■■□□□ 1.45
HMGA1-201ENST00000311487 MTHFSDQ2M296 383 aaKnown RBP24.08■■□□□ 1.45
HMGA1-201ENST00000311487 BARGINQ6ZT62 677 aa24.08■■□□□ 1.45
HMGA1-201ENST00000311487 SEPT12Q8IYM1 358 aa24.08■■□□□ 1.45
HMGA1-201ENST00000311487 NCAPD2Q15021 1401 aa24.08■■□□□ 1.45
HMGA1-201ENST00000311487 APAF1O14727 1248 aa24.06■■□□□ 1.44
HMGA1-201ENST00000311487 MAPK8IP3Q9UPT6 1336 aa24.06■■□□□ 1.44
HMGA1-201ENST00000311487 ZCRB1Q8TBF4 217 aaKnown RBP24.06■■□□□ 1.44
HMGA1-201ENST00000311487 RUNDC1Q96C34 613 aa24.06■■□□□ 1.44
HMGA1-201ENST00000311487 EXOC5O00471 708 aa24.05■■□□□ 1.44
HMGA1-201ENST00000311487 DDB1Q16531 1140 aa24.05■■□□□ 1.44
HMGA1-201ENST00000311487 DISP2A7MBM2 1401 aa24.05■■□□□ 1.44
HMGA1-201ENST00000311487 EP400Q96L91 3159 aa24.05■■□□□ 1.44
HMGA1-201ENST00000311487 OVOS2A0A0G2JMS6 1433 aa24.03■■□□□ 1.44
HMGA1-201ENST00000311487 NEFMP07197 916 aa24.03■■□□□ 1.44
HMGA1-201ENST00000311487 PLEKHO1Q53GL0 409 aaPredicted RBP24.03■■□□□ 1.44
HMGA1-201ENST00000311487 ZNF530Q6P9A1 599 aaPredicted RBP24.03■■□□□ 1.44
HMGA1-201ENST00000311487 CYP27B1O15528 508 aa24.02■■□□□ 1.44
HMGA1-201ENST00000311487 SPG7Q9UQ90 795 aa24.01■■□□□ 1.43
HMGA1-201ENST00000311487 ONECUT3O60422 494 aaPredicted RBP24■■□□□ 1.43
HMGA1-201ENST00000311487 DCTN1Q14203 1278 aa24■■□□□ 1.43
HMGA1-201ENST00000311487 PNNQ9H307 717 aaKnown RBP24■■□□□ 1.43
HMGA1-201ENST00000311487 PDE3BQ13370 1112 aa24■■□□□ 1.43
HMGA1-201ENST00000311487 WNK3Q9BYP7 1800 aa23.99■■□□□ 1.43
HMGA1-201ENST00000311487 RIPK4P57078 832 aa23.99■■□□□ 1.43
HMGA1-201ENST00000311487 MPRIPQ6WCQ1 1025 aa23.99■■□□□ 1.43
HMGA1-201ENST00000311487 MARCH10Q8NA82 808 aaPredicted RBP23.99■■□□□ 1.43
HMGA1-201ENST00000311487 CDCA7Q9BWT1 371 aaPredicted RBP23.99■■□□□ 1.43
HMGA1-201ENST00000311487 TMPOP42166 694 aaKnown RBP23.98■■□□□ 1.43
HMGA1-201ENST00000311487 AMOTQ4VCS5 1084 aa23.98■■□□□ 1.43
HMGA1-201ENST00000311487 PARP4Q9UKK3 1724 aaKnown RBP23.98■■□□□ 1.43
HMGA1-201ENST00000311487 THUMPD2Q9BTF0 503 aaKnown RBP23.98■■□□□ 1.43
HMGA1-201ENST00000311487 LRRC37A3O60309 1634 aa23.97■■□□□ 1.43
HMGA1-201ENST00000311487 RGS12O14924 1447 aa23.97■■□□□ 1.43
HMGA1-201ENST00000311487 PHKG2P15735 406 aa23.96■■□□□ 1.43
HMGA1-201ENST00000311487 NFE2L2Q16236 605 aa23.96■■□□□ 1.43
HMGA1-201ENST00000311487 C1orf141Q5JVX7 400 aa23.96■■□□□ 1.43
HMGA1-201ENST00000311487 MCM10Q7L590 875 aa23.96■■□□□ 1.43
HMGA1-201ENST00000311487 LGR6Q9HBX8 967 aa23.96■■□□□ 1.43
HMGA1-201ENST00000311487 THSD7AQ9UPZ6 1657 aa23.95■■□□□ 1.43
HMGA1-201ENST00000311487 PCDH11XQ9BZA7 1347 aa23.95■■□□□ 1.42
HMGA1-201ENST00000311487 PCDH11YQ9BZA8 1340 aa23.95■■□□□ 1.42
HMGA1-201ENST00000311487 HNRNPUQ00839 825 aaKnown RBP eCLIP23.95■■□□□ 1.42
HMGA1-201ENST00000311487 GAS2L2Q8NHY3 880 aa23.95■■□□□ 1.42
HMGA1-201ENST00000311487 TNS2Q63HR2 1409 aa23.94■■□□□ 1.42
HMGA1-201ENST00000311487 IFNL2Q8IZJ0 200 aa23.94■■□□□ 1.42
HMGA1-201ENST00000311487 ACSBG1Q96GR2 724 aa23.94■■□□□ 1.42
HMGA1-201ENST00000311487 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.94■■□□□ 1.42
HMGA1-201ENST00000311487 SHANK3Q9BYB0 1731 aa23.93■■□□□ 1.42
HMGA1-201ENST00000311487 BRWD3Q6RI45 1802 aa23.93■■□□□ 1.42
HMGA1-201ENST00000311487 KRT27Q7Z3Y8 459 aa23.93■■□□□ 1.42
HMGA1-201ENST00000311487 KAT6BQ8WYB5 2073 aa23.93■■□□□ 1.42
HMGA1-201ENST00000311487 GNAT3A8MTJ3 354 aa23.92■■□□□ 1.42
HMGA1-201ENST00000311487 PKD1L3Q7Z443 1732 aa23.92■■□□□ 1.42
HMGA1-201ENST00000311487 AKAP4Q5JQC9 854 aa23.92■■□□□ 1.42
HMGA1-201ENST00000311487 TRIM35Q9UPQ4 493 aa23.91■■□□□ 1.42
HMGA1-201ENST00000311487 IL17REQ8NFR9 667 aa23.9■■□□□ 1.42
HMGA1-201ENST00000311487 SYTL4Q96C24 671 aaPredicted RBP23.9■■□□□ 1.42
HMGA1-201ENST00000311487 MAP3K5Q99683 1374 aa23.9■■□□□ 1.42
HMGA1-201ENST00000311487 DLG5Q8TDM6 1919 aa23.9■■□□□ 1.42
HMGA1-201ENST00000311487 RTF1Q92541 710 aaKnown RBP23.89■■□□□ 1.42
HMGA1-201ENST00000311487 PTF1AQ7RTS3 328 aa23.88■■□□□ 1.41
HMGA1-201ENST00000311487 KCNQ2O43526 872 aa23.87■■□□□ 1.41
HMGA1-201ENST00000311487 KDM6AO15550 1401 aaPredicted RBP23.86■■□□□ 1.41
HMGA1-201ENST00000311487 RNMTO43148 476 aaKnown RBP23.86■■□□□ 1.41
HMGA1-201ENST00000311487 MIS18AQ9NYP9 233 aa23.86■■□□□ 1.41
HMGA1-201ENST00000311487 PRIM1P49642 420 aaKnown RBP23.85■■□□□ 1.41
HMGA1-201ENST00000311487 LAS1LQ9Y4W2 734 aaKnown RBP23.85■■□□□ 1.41
HMGA1-201ENST00000311487 WWC1Q8IX03 1113 aa23.84■■□□□ 1.41
HMGA1-201ENST00000311487 DCAF5Q96JK2 942 aa23.84■■□□□ 1.41
HMGA1-201ENST00000311487 NFATC2IPQ8NCF5 419 aa23.84■■□□□ 1.41
HMGA1-201ENST00000311487 NKX1-1Q15270 411 aaPredicted RBP23.82■■□□□ 1.4
HMGA1-201ENST00000311487 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
HMGA1-201ENST00000311487 HSP90AB1P08238 724 aaKnown RBP23.8■■□□□ 1.4
HMGA1-201ENST00000311487 CABP4P57796 275 aa23.8■■□□□ 1.4
HMGA1-201ENST00000311487 TRIM37O94972 964 aa23.8■■□□□ 1.4
HMGA1-201ENST00000311487 ILDR2Q71H61 639 aa23.8■■□□□ 1.4
HMGA1-201ENST00000311487 TEFQ10587 303 aa23.79■■□□□ 1.4
HMGA1-201ENST00000311487 SPINK5Q9NQ38 1064 aaPredicted RBP23.79■■□□□ 1.4
HMGA1-201ENST00000311487 TOGARAM1Q9Y4F4 1720 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 LMOD3Q0VAK6 560 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 SLC39A6Q13433 755 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 FAM196AQ6ZSG2 479 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 PIGBQ92521 554 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 CDCA7LQ96GN5 454 aa23.78■■□□□ 1.4
HMGA1-201ENST00000311487 PLEKHG2Q9H7P9 1386 aa23.77■■□□□ 1.4
HMGA1-201ENST00000311487 SLC52A2Q9HAB3 445 aa23.77■■□□□ 1.4
HMGA1-201ENST00000311487 VIRMAQ69YN4 1812 aaKnown RBP23.77■■□□□ 1.4
HMGA1-201ENST00000311487 HTATSF1O43719 755 aaKnown RBP23.76■■□□□ 1.39
HMGA1-201ENST00000311487 TMOD3Q9NYL9 352 aa23.76■■□□□ 1.39
HMGA1-201ENST00000311487 DOT1LQ8TEK3 1739 aa23.76■■□□□ 1.39
HMGA1-201ENST00000311487 CEMIPQ8WUJ3 1361 aa23.76■■□□□ 1.39
HMGA1-201ENST00000311487 KCNQ3O43525 872 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms