RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 FCHSD2O94868 740 aa23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 U2AF1L5P0DN76 240 aaPredicted RBP23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 U2AF1Q01081 240 aaKnown RBP eCLIP23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 ZCRB1Q8TBF4 217 aaKnown RBP23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 SPG7Q9UQ90 795 aa23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 MEGF6O75095 1541 aa23.87■■□□□ 1.41
SSSCA1-201ENST00000309328 WNK3Q9BYP7 1800 aa23.85■■□□□ 1.41
SSSCA1-201ENST00000309328 WDR43Q15061 677 aaKnown RBP eCLIP23.85■■□□□ 1.41
SSSCA1-201ENST00000309328 PLEKHO1Q53GL0 409 aaPredicted RBP23.85■■□□□ 1.41
SSSCA1-201ENST00000309328 PCDH11XQ9BZA7 1347 aa23.84■■□□□ 1.41
SSSCA1-201ENST00000309328 PCDH11YQ9BZA8 1340 aa23.84■■□□□ 1.41
SSSCA1-201ENST00000309328 NEFMP07197 916 aa23.84■■□□□ 1.41
SSSCA1-201ENST00000309328 AEBP1Q8IUX7 1158 aa23.83■■□□□ 1.41
SSSCA1-201ENST00000309328 BCL9O00512 1426 aa23.83■■□□□ 1.4
SSSCA1-201ENST00000309328 RGPD2P0DJD1 1756 aa23.83■■□□□ 1.4
SSSCA1-201ENST00000309328 LRRC37A3O60309 1634 aa23.82■■□□□ 1.4
SSSCA1-201ENST00000309328 HMOX1P09601 288 aa23.82■■□□□ 1.4
SSSCA1-201ENST00000309328 FAM196AQ6ZSG2 479 aa23.81■■□□□ 1.4
SSSCA1-201ENST00000309328 MRS2Q9HD23 443 aa23.81■■□□□ 1.4
SSSCA1-201ENST00000309328 CCER2I3L3R5 266 aa23.8■■□□□ 1.4
SSSCA1-201ENST00000309328 RSPH6AQ9H0K4 717 aa23.8■■□□□ 1.4
SSSCA1-201ENST00000309328 HSP90AB1P08238 724 aaKnown RBP23.78■■□□□ 1.4
SSSCA1-201ENST00000309328 PRKAR2BP31323 418 aa23.77■■□□□ 1.4
SSSCA1-201ENST00000309328 IFNL2Q8IZJ0 200 aa23.77■■□□□ 1.4
SSSCA1-201ENST00000309328 GAS2L2Q8NHY3 880 aa23.77■■□□□ 1.4
SSSCA1-201ENST00000309328 MARCH10Q8NA82 808 aaPredicted RBP23.76■■□□□ 1.39
SSSCA1-201ENST00000309328 PKD1L3Q7Z443 1732 aa23.76■■□□□ 1.39
SSSCA1-201ENST00000309328 C1orf141Q5JVX7 400 aa23.75■■□□□ 1.39
SSSCA1-201ENST00000309328 DDX54Q8TDD1 881 aaKnown RBP23.75■■□□□ 1.39
SSSCA1-201ENST00000309328 MAPK8IP3Q9UPT6 1336 aa23.74■■□□□ 1.39
SSSCA1-201ENST00000309328 NKX1-1Q15270 411 aaPredicted RBP23.73■■□□□ 1.39
SSSCA1-201ENST00000309328 ZNF530Q6P9A1 599 aaPredicted RBP23.73■■□□□ 1.39
SSSCA1-201ENST00000309328 CYP27B1O15528 508 aa23.72■■□□□ 1.39
SSSCA1-201ENST00000309328 PHKG2P15735 406 aa23.72■■□□□ 1.39
SSSCA1-201ENST00000309328 AKAP4Q5JQC9 854 aa23.72■■□□□ 1.39
SSSCA1-201ENST00000309328 CCDC125Q86Z20 511 aa23.72■■□□□ 1.39
SSSCA1-201ENST00000309328 PNISRQ8TF01 805 aaKnown RBP23.72■■□□□ 1.39
SSSCA1-201ENST00000309328 ADAMTS8Q9UP79 889 aa23.71■■□□□ 1.39
SSSCA1-201ENST00000309328 DCAF5Q96JK2 942 aa23.7■■□□□ 1.38
SSSCA1-201ENST00000309328 PLEKHF1Q96S99 279 aa23.7■■□□□ 1.38
SSSCA1-201ENST00000309328 BRWD3Q6RI45 1802 aa23.7■■□□□ 1.38
SSSCA1-201ENST00000309328 EP400Q96L91 3159 aa23.69■■□□□ 1.38
SSSCA1-201ENST00000309328 MTHFSDQ2M296 383 aaKnown RBP23.68■■□□□ 1.38
SSSCA1-201ENST00000309328 CCDC184Q52MB2 194 aa23.68■■□□□ 1.38
SSSCA1-201ENST00000309328 RUNDC1Q96C34 613 aa23.68■■□□□ 1.38
SSSCA1-201ENST00000309328 HTATSF1O43719 755 aaKnown RBP23.66■■□□□ 1.38
SSSCA1-201ENST00000309328 PHACTR3Q96KR7 559 aa23.66■■□□□ 1.38
SSSCA1-201ENST00000309328 GNAT3A8MTJ3 354 aa23.65■■□□□ 1.38
SSSCA1-201ENST00000309328 BCL11BQ9C0K0 894 aaPredicted RBP23.65■■□□□ 1.38
SSSCA1-201ENST00000309328 MAP3K5Q99683 1374 aa23.65■■□□□ 1.38
SSSCA1-201ENST00000309328 SHANK3Q9BYB0 1731 aa23.64■■□□□ 1.38
SSSCA1-201ENST00000309328 ERVV-2B6SEH9 535 aa23.64■■□□□ 1.37
SSSCA1-201ENST00000309328 SF3B2Q13435 895 aaKnown RBP23.64■■□□□ 1.37
SSSCA1-201ENST00000309328 NFE2L2Q16236 605 aa23.64■■□□□ 1.37
SSSCA1-201ENST00000309328 MIER1Q8N108 512 aa23.64■■□□□ 1.37
SSSCA1-201ENST00000309328 LMOD3Q0VAK6 560 aa23.63■■□□□ 1.37
SSSCA1-201ENST00000309328 FAM182BQ5T319 152 aa23.63■■□□□ 1.37
SSSCA1-201ENST00000309328 RTF1Q92541 710 aaKnown RBP23.62■■□□□ 1.37
SSSCA1-201ENST00000309328 TRIM37O94972 964 aa23.59■■□□□ 1.37
SSSCA1-201ENST00000309328 NCBP3Q53F19 620 aaKnown RBP23.59■■□□□ 1.37
SSSCA1-201ENST00000309328 NGEFQ8N5V2 710 aa23.59■■□□□ 1.37
SSSCA1-201ENST00000309328 CCDC146Q8IYE0 955 aa23.58■■□□□ 1.37
SSSCA1-201ENST00000309328 HMGB2P26583 209 aaKnown RBP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 TMPOP42166 694 aaKnown RBP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 PRIM1P49642 420 aaKnown RBP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 MPRIPQ6WCQ1 1025 aa23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 FAM9BQ8IZU0 186 aa23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 UPF1Q92900 1129 aaKnown RBP eCLIP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 SYTL4Q96C24 671 aaPredicted RBP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 TMOD3Q9NYL9 352 aa23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 KDM6AO15550 1401 aaPredicted RBP23.57■■□□□ 1.36
SSSCA1-201ENST00000309328 RNMTO43148 476 aaKnown RBP23.56■■□□□ 1.36
SSSCA1-201ENST00000309328 BAG6P46379 1132 aa23.56■■□□□ 1.36
SSSCA1-201ENST00000309328 CABP4P57796 275 aa23.56■■□□□ 1.36
SSSCA1-201ENST00000309328 ACSBG1Q96GR2 724 aa23.56■■□□□ 1.36
SSSCA1-201ENST00000309328 NHSQ6T4R5 1651 aa23.56■■□□□ 1.36
SSSCA1-201ENST00000309328 CEMIPQ8WUJ3 1361 aa23.55■■□□□ 1.36
SSSCA1-201ENST00000309328 RIPK4P57078 832 aa23.55■■□□□ 1.36
SSSCA1-201ENST00000309328 PLSCR1O15162 318 aa23.53■■□□□ 1.36
SSSCA1-201ENST00000309328 TEFQ10587 303 aa23.53■■□□□ 1.36
SSSCA1-201ENST00000309328 SMARCC1Q92922 1105 aaPredicted RBP23.53■■□□□ 1.36
SSSCA1-201ENST00000309328 SLC52A2Q9HAB3 445 aa23.53■■□□□ 1.36
SSSCA1-201ENST00000309328 MRC1P22897 1456 aa23.53■■□□□ 1.36
SSSCA1-201ENST00000309328 ADAMTS7Q9UKP4 1686 aa23.52■■□□□ 1.36
SSSCA1-201ENST00000309328 KCNQ2O43526 872 aa23.52■■□□□ 1.36
SSSCA1-201ENST00000309328 DOT1LQ8TEK3 1739 aa23.51■■□□□ 1.35
SSSCA1-201ENST00000309328 APAF1O14727 1248 aa23.51■■□□□ 1.35
SSSCA1-201ENST00000309328 APBA3O96018 575 aa23.51■■□□□ 1.35
SSSCA1-201ENST00000309328 IL17REQ8NFR9 667 aa23.51■■□□□ 1.35
SSSCA1-201ENST00000309328 CALD1Q05682 793 aaKnown RBP23.5■■□□□ 1.35
SSSCA1-201ENST00000309328 CCDC27Q2M243 656 aa23.5■■□□□ 1.35
SSSCA1-201ENST00000309328 PIGBQ92521 554 aa23.5■■□□□ 1.35
SSSCA1-201ENST00000309328 LGR6Q9HBX8 967 aa23.5■■□□□ 1.35
SSSCA1-201ENST00000309328 SBF2Q86WG5 1849 aa23.49■■□□□ 1.35
SSSCA1-201ENST00000309328 NFATC2IPQ8NCF5 419 aa23.49■■□□□ 1.35
SSSCA1-201ENST00000309328 TOGARAM1Q9Y4F4 1720 aa23.47■■□□□ 1.35
SSSCA1-201ENST00000309328 BABAM1Q9NWV8 329 aa23.47■■□□□ 1.35
SSSCA1-201ENST00000309328 SCN11AQ9UI33 1791 aa23.47■■□□□ 1.35
SSSCA1-201ENST00000309328 NEUROD2Q15784 382 aa23.46■■□□□ 1.35
SSSCA1-201ENST00000309328 MCM10Q7L590 875 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms