RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 USP47Q96K76 1375 aa29.11■■■□□ 2.25
SMCO4-201ENST00000298966 EDC4Q6P2E9 1401 aaKnown RBP29.11■■■□□ 2.25
SMCO4-201ENST00000298966 HSPA5P11021 654 aaKnown RBP29.09■■■□□ 2.25
SMCO4-201ENST00000298966 IP6K1Q92551 441 aa29.09■■■□□ 2.25
SMCO4-201ENST00000298966 NLGN2Q8NFZ4 835 aa29.08■■■□□ 2.25
SMCO4-201ENST00000298966 LTV1Q96GA3 475 aaPredicted RBP29.08■■■□□ 2.25
SMCO4-201ENST00000298966 PRIM1P49642 420 aaKnown RBP29.07■■■□□ 2.24
SMCO4-201ENST00000298966 KCNQ4P56696 695 aa29.07■■■□□ 2.24
SMCO4-201ENST00000298966 ANKRD36BQ8N2N9 1353 aa29.07■■■□□ 2.24
SMCO4-201ENST00000298966 TERF2IPQ9NYB0 399 aa29.07■■■□□ 2.24
SMCO4-201ENST00000298966 LY75O60449 1722 aa29.06■■■□□ 2.24
SMCO4-201ENST00000298966 DOT1LQ8TEK3 1739 aa29.06■■■□□ 2.24
SMCO4-201ENST00000298966 SHANK3Q9BYB0 1731 aa29.06■■■□□ 2.24
SMCO4-201ENST00000298966 GRIN3BO60391 1043 aa29.06■■■□□ 2.24
SMCO4-201ENST00000298966 SLC12A5Q9H2X9 1139 aa29.06■■■□□ 2.24
SMCO4-201ENST00000298966 DIEXFQ68CQ4 756 aaKnown RBP29.04■■■□□ 2.24
SMCO4-201ENST00000298966 MSH5O43196 834 aa29.02■■■□□ 2.24
SMCO4-201ENST00000298966 IFFO2Q5TF58 517 aa29.02■■■□□ 2.24
SMCO4-201ENST00000298966 CCNL1Q9UK58 526 aaPredicted RBP29.02■■■□□ 2.24
SMCO4-201ENST00000298966 A0A1W2PP64 1363 aa29.01■■■□□ 2.24
SMCO4-201ENST00000298966 NSD2O96028 1365 aa29■■■□□ 2.23
SMCO4-201ENST00000298966 YBX3P16989 372 aaKnown RBP eCLIP28.99■■■□□ 2.23
SMCO4-201ENST00000298966 ZCRB1Q8TBF4 217 aaKnown RBP28.99■■■□□ 2.23
SMCO4-201ENST00000298966 GOLGB1Q14789 3259 aaKnown RBP28.97■■■□□ 2.23
SMCO4-201ENST00000298966 COL23A1Q86Y22 540 aaPredicted RBP28.96■■■□□ 2.23
SMCO4-201ENST00000298966 RGPD2P0DJD1 1756 aa28.96■■■□□ 2.23
SMCO4-201ENST00000298966 SLC24A1O60721 1099 aa28.95■■■□□ 2.22
SMCO4-201ENST00000298966 HOXC9P31274 260 aa28.95■■■□□ 2.22
SMCO4-201ENST00000298966 AMPHP49418 695 aa28.95■■■□□ 2.22
SMCO4-201ENST00000298966 COG3Q96JB2 828 aa28.95■■■□□ 2.22
SMCO4-201ENST00000298966 MAP3K19Q56UN5 1328 aa28.94■■■□□ 2.22
SMCO4-201ENST00000298966 PUS7Q96PZ0 661 aaKnown RBP28.94■■■□□ 2.22
SMCO4-201ENST00000298966 MEGF6O75095 1541 aa28.93■■■□□ 2.22
SMCO4-201ENST00000298966 ATP10DQ9P241 1426 aa28.92■■■□□ 2.22
SMCO4-201ENST00000298966 MSL1Q68DK7 614 aa28.91■■■□□ 2.22
SMCO4-201ENST00000298966 CEP350Q5VT06 3117 aa28.91■■■□□ 2.22
SMCO4-201ENST00000298966 HMGB2P26583 209 aaKnown RBP28.9■■■□□ 2.22
SMCO4-201ENST00000298966 CD2APQ9Y5K6 639 aa28.88■■■□□ 2.21
SMCO4-201ENST00000298966 C5P01031 1676 aa28.87■■■□□ 2.21
SMCO4-201ENST00000298966 ST20-MTHFSA0A0A6YYL1 179 aa28.87■■■□□ 2.21
SMCO4-201ENST00000298966 FLAD1Q8NFF5 587 aa28.87■■■□□ 2.21
SMCO4-201ENST00000298966 GPBP1L1Q9HC44 474 aaPredicted RBP28.87■■■□□ 2.21
SMCO4-201ENST00000298966 CGNL1Q0VF96 1302 aa28.87■■■□□ 2.21
SMCO4-201ENST00000298966 FBLN1P23142 703 aa28.86■■■□□ 2.21
SMCO4-201ENST00000298966 RAPGEF4Q8WZA2 1011 aa28.85■■■□□ 2.21
SMCO4-201ENST00000298966 RTL1A6NKG5 1358 aa28.85■■■□□ 2.21
SMCO4-201ENST00000298966 NBPF6Q5VWK0 638 aa28.83■■■□□ 2.21
SMCO4-201ENST00000298966 NBPF4Q96M43 638 aa28.83■■■□□ 2.21
SMCO4-201ENST00000298966 TAF1LQ8IZX4 1826 aa28.82■■■□□ 2.2
SMCO4-201ENST00000298966 SMG6Q86US8 1419 aaKnown RBP28.81■■■□□ 2.2
SMCO4-201ENST00000298966 TATP17735 454 aaPredicted RBP28.81■■■□□ 2.2
SMCO4-201ENST00000298966 USHBP1Q8N6Y0 703 aa28.81■■■□□ 2.2
SMCO4-201ENST00000298966 WASHC2AQ641Q2 1341 aa28.8■■■□□ 2.2
SMCO4-201ENST00000298966 PALLDQ8WX93 1383 aa28.79■■■□□ 2.2
SMCO4-201ENST00000298966 PCDH11XQ9BZA7 1347 aa28.78■■■□□ 2.2
SMCO4-201ENST00000298966 PCDH11YQ9BZA8 1340 aa28.78■■■□□ 2.2
SMCO4-201ENST00000298966 RRS1Q15050 365 aaKnown RBP28.78■■■□□ 2.2
SMCO4-201ENST00000298966 ADCY9O60503 1353 aa28.77■■■□□ 2.2
SMCO4-201ENST00000298966 HSPA6P17066 643 aa28.77■■■□□ 2.2
SMCO4-201ENST00000298966 ZNF526Q8TF50 670 aaPredicted RBP28.77■■■□□ 2.2
SMCO4-201ENST00000298966 TESK2Q96S53 571 aa28.77■■■□□ 2.2
SMCO4-201ENST00000298966 KIF7Q2M1P5 1343 aa28.76■■■□□ 2.19
SMCO4-201ENST00000298966 TMF1P82094 1093 aa28.76■■■□□ 2.19
SMCO4-201ENST00000298966 CDCA8Q53HL2 280 aa28.76■■■□□ 2.19
SMCO4-201ENST00000298966 MPRIPQ6WCQ1 1025 aa28.76■■■□□ 2.19
SMCO4-201ENST00000298966 AK7Q96M32 723 aa28.76■■■□□ 2.19
SMCO4-201ENST00000298966 C4BP0C0L5 1744 aa28.74■■■□□ 2.19
SMCO4-201ENST00000298966 SMARCC1Q92922 1105 aaPredicted RBP28.73■■■□□ 2.19
SMCO4-201ENST00000298966 IGSF1Q8N6C5 1336 aa28.71■■■□□ 2.19
SMCO4-201ENST00000298966 ITGB4P16144 1822 aa28.71■■■□□ 2.19
SMCO4-201ENST00000298966 GGNBP2Q9H3C7 697 aa28.71■■■□□ 2.19
SMCO4-201ENST00000298966 NSD3Q9BZ95 1437 aa28.7■■■□□ 2.19
SMCO4-201ENST00000298966 DDX10Q13206 875 aaKnown RBP28.7■■■□□ 2.18
SMCO4-201ENST00000298966 UBR3Q6ZT12 1888 aa28.7■■■□□ 2.18
SMCO4-201ENST00000298966 FYB1O15117 783 aa28.69■■■□□ 2.18
SMCO4-201ENST00000298966 INSRP06213 1382 aa28.69■■■□□ 2.18
SMCO4-201ENST00000298966 PHF14O94880 888 aa28.68■■■□□ 2.18
SMCO4-201ENST00000298966 TOGARAM1Q9Y4F4 1720 aa28.68■■■□□ 2.18
SMCO4-201ENST00000298966 CYP27B1O15528 508 aa28.67■■■□□ 2.18
SMCO4-201ENST00000298966 HSP90AB2PQ58FF8 381 aa28.67■■■□□ 2.18
SMCO4-201ENST00000298966 WWC3Q9ULE0 1092 aa28.67■■■□□ 2.18
SMCO4-201ENST00000298966 FLT4P35916 1363 aa28.66■■■□□ 2.18
SMCO4-201ENST00000298966 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.66■■■□□ 2.18
SMCO4-201ENST00000298966 AMIGO3Q86WK7 504 aa28.65■■■□□ 2.18
SMCO4-201ENST00000298966 KIF24Q5T7B8 1368 aa28.64■■■□□ 2.18
SMCO4-201ENST00000298966 SSFA2P28290 1259 aa28.63■■■□□ 2.17
SMCO4-201ENST00000298966 KIF20BQ96Q89 1820 aa28.62■■■□□ 2.17
SMCO4-201ENST00000298966 SMIM5Q71RC9 77 aa28.62■■■□□ 2.17
SMCO4-201ENST00000298966 PIGBQ92521 554 aa28.62■■■□□ 2.17
SMCO4-201ENST00000298966 PKD1L3Q7Z443 1732 aa28.62■■■□□ 2.17
SMCO4-201ENST00000298966 LOC102724428A0A0B4J2F2 783 aa28.59■■■□□ 2.17
SMCO4-201ENST00000298966 KIF3CO14782 793 aa28.59■■■□□ 2.17
SMCO4-201ENST00000298966 SIK1P57059 783 aa28.59■■■□□ 2.17
SMCO4-201ENST00000298966 MAP2P11137 1827 aaKnown RBP28.59■■■□□ 2.17
SMCO4-201ENST00000298966 SPG7Q9UQ90 795 aa28.58■■■□□ 2.17
SMCO4-201ENST00000298966 NKX1-1Q15270 411 aaPredicted RBP28.57■■■□□ 2.16
SMCO4-201ENST00000298966 MIER1Q8N108 512 aa28.57■■■□□ 2.16
SMCO4-201ENST00000298966 LINC00116Q8NCU8 138 aa28.57■■■□□ 2.16
SMCO4-201ENST00000298966 CICQ96RK0 1608 aaPredicted RBP28.56■■■□□ 2.16
SMCO4-201ENST00000298966 GNPATO15228 680 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms