RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 MIS18AQ9NYP9 233 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 DAPK1P53355 1430 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 NSD3Q9BZ95 1437 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 MYL6BP14649 208 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 TRIM22Q8IYM9 498 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 HSP90AB3PQ58FF7 597 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 ZNF530Q6P9A1 599 aaPredicted RBP19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 CDK5RAP3Q96JB5 506 aa19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 FKBP4Q02790 459 aaKnown RBP eCLIP19.38■□□□□ 0.69
SH3RF1-201ENST00000284637 DDX54Q8TDD1 881 aaKnown RBP19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 ERLIN1O75477 346 aa19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 KIF2AO00139 706 aaPredicted RBP19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 ESCO1Q5FWF5 840 aa19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 TMCO3Q6UWJ1 677 aa19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 UBXN4Q92575 508 aa19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 RRAGDQ9NQL2 400 aaPredicted RBP19.37■□□□□ 0.69
SH3RF1-201ENST00000284637 CBFA2T2O43439 604 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 DACH1Q9UI36 760 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 SPDYE4A6NLX3 237 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 KIAA0754O94854 1291 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 MX1P20591 662 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 NUP133Q8WUM0 1156 aa19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.36■□□□□ 0.69
SH3RF1-201ENST00000284637 ATF3P18847 181 aa19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 RBM42Q9BTD8 480 aaKnown RBP19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 ZNF692Q9BU19 519 aaPredicted RBP19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 ANKRD30BQ9BXX2 1392 aa19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 CCDC94Q9BW85 323 aaPredicted RBP19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 IKQ13123 557 aaPredicted RBP19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 DUSP27Q5VZP5 1158 aa19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 NKTRP30414 1462 aaKnown RBP19.35■□□□□ 0.69
SH3RF1-201ENST00000284637 TRERF1Q96PN7 1200 aa19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 USP25Q9UHP3 1055 aa19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 GPRASP1Q5JY77 1395 aa19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 PRPF40BQ6NWY9 871 aaKnown RBP19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 CCAR1Q8IX12 1150 aaKnown RBP19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 KLHL40Q2TBA0 621 aa19.34■□□□□ 0.69
SH3RF1-201ENST00000284637 FAM193AP78312 1265 aa19.33■□□□□ 0.69
SH3RF1-201ENST00000284637 MCM10Q7L590 875 aa19.33■□□□□ 0.69
SH3RF1-201ENST00000284637 CCDC69A6NI79 296 aa19.33■□□□□ 0.69
SH3RF1-201ENST00000284637 CFAP100Q494V2 611 aa19.33■□□□□ 0.69
SH3RF1-201ENST00000284637 CCDC181Q5TID7 509 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 KIF6Q6ZMV9 814 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 GDPD2Q9HCC8 539 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 LRPPRCP42704 1394 aaKnown RBP19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 CCDC183Q5T5S1 534 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 OSCARQ8IYS5 282 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 MYO6Q9UM54 1294 aa19.33■□□□□ 0.68
SH3RF1-201ENST00000284637 KRT32Q14532 448 aa19.32■□□□□ 0.68
SH3RF1-201ENST00000284637 SYNJ2O15056 1496 aa19.32■□□□□ 0.68
SH3RF1-201ENST00000284637 IGHDP01880 384 aa19.32■□□□□ 0.68
SH3RF1-201ENST00000284637 KRT18P05783 430 aaKnown RBP19.32■□□□□ 0.68
SH3RF1-201ENST00000284637 PTPN14Q15678 1187 aa19.32■□□□□ 0.68
SH3RF1-201ENST00000284637 TROQ12816 1431 aaPredicted RBP19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 CCDC102AQ96A19 550 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 CENPHQ9H3R5 247 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 EFCAB5A4FU69 1503 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 NACAP1Q9BZK3 213 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 SLC3A2P08195 630 aaKnown RBP19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 TRIM27P14373 513 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 HS1BP3Q53T59 392 aa19.31■□□□□ 0.68
SH3RF1-201ENST00000284637 RTEL1-TNFRSF6BF6WH68 1400 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 STIM1Q13586 685 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 KIF18AQ8NI77 898 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 LARP6Q9BRS8 491 aaKnown RBP19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 TBC1D32Q96NH3 1257 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 SMTNL1A8MU46 457 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 TATP17735 454 aaPredicted RBP19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 SFPQP23246 707 aaKnown RBP eCLIP19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 TANGO6Q9C0B7 1094 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 GOLGA6L10A6NI86 522 aa19.3■□□□□ 0.68
SH3RF1-201ENST00000284637 CKAP2LQ8IYA6 745 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 ZKSCAN5Q9Y2L8 839 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 GTF2F1P35269 517 aaKnown RBP eCLIP19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 CCDC57Q2TAC2 916 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 KIF1BPQ96EK5 621 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 LRRFIP2Q9Y608 721 aaKnown RBP19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 KIF20AO95235 890 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 ALDH1L2Q3SY69 923 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 ZHX3Q9H4I2 956 aa19.29■□□□□ 0.68
SH3RF1-201ENST00000284637 IRX3P78415 501 aaPredicted RBP19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 F6X3S4 739 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 GIMAP7Q8NHV1 300 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 BTBD11A6QL63 1104 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 CDKL5O76039 1030 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 ARHGAP29Q52LW3 1261 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 CEP126Q9P2H0 1117 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 CTNNA3Q9UI47 895 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 ATAD2Q6PL18 1390 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 GLRX3O76003 335 aaKnown RBP19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 TNNT1P13805 278 aa19.28■□□□□ 0.68
SH3RF1-201ENST00000284637 KRT222Q8N1A0 295 aa19.27■□□□□ 0.68
SH3RF1-201ENST00000284637 CABP4P57796 275 aa19.27■□□□□ 0.68
SH3RF1-201ENST00000284637 TBC1D9Q6ZT07 1266 aa19.27■□□□□ 0.68
SH3RF1-201ENST00000284637 SCAND2PQ9GZW5 306 aaPredicted RBP19.27■□□□□ 0.68
SH3RF1-201ENST00000284637 GRIN2BQ13224 1484 aa19.27■□□□□ 0.68
SH3RF1-201ENST00000284637 PDIA4P13667 645 aaKnown RBP19.27■□□□□ 0.67
SH3RF1-201ENST00000284637 EPB41L2O43491 1005 aaKnown RBP19.26■□□□□ 0.67
SH3RF1-201ENST00000284637 BAG4O95429 457 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms