RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PPFIBP1Q86W92 1011 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 DEF6Q9H4E7 631 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 ZNHIT6Q9NWK9 470 aaKnown RBP13.55□□□□□ -0.24
USP53-201ENST00000274030 NESP48681 1621 aa13.55□□□□□ -0.24
USP53-201ENST00000274030 GNAT3A8MTJ3 354 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
USP53-201ENST00000274030 SLFN5Q08AF3 891 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 C20orf194Q5TEA3 1177 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 FILIP1Q7Z7B0 1213 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 H0YHG0 523 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 GRPEL1Q9HAV7 217 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 CCDC61Q9Y6R9 512 aa13.54□□□□□ -0.24
USP53-201ENST00000274030 ZSCAN25Q6NSZ9 544 aa13.53□□□□□ -0.24
USP53-201ENST00000274030 USP5P45974 858 aa13.53□□□□□ -0.24
USP53-201ENST00000274030 F6X3S4 739 aa13.53□□□□□ -0.24
USP53-201ENST00000274030 BOLA2Q9H3K6 86 aa13.53□□□□□ -0.24
USP53-201ENST00000274030 CAMK4Q16566 473 aa13.52□□□□□ -0.24
USP53-201ENST00000274030 RPAP2Q8IXW5 612 aaPredicted RBP13.52□□□□□ -0.24
USP53-201ENST00000274030 NOM1Q5C9Z4 860 aaKnown RBP13.52□□□□□ -0.24
USP53-201ENST00000274030 ERCC4Q92889 916 aaPredicted RBP13.52□□□□□ -0.24
USP53-201ENST00000274030 PIP4K2AP48426 406 aaPredicted RBP13.52□□□□□ -0.25
USP53-201ENST00000274030 STIM1Q13586 685 aa13.52□□□□□ -0.25
USP53-201ENST00000274030 METTL24Q5JXM2 366 aa13.52□□□□□ -0.25
USP53-201ENST00000274030 SSH1Q8WYL5 1049 aa13.52□□□□□ -0.25
USP53-201ENST00000274030 SF3B2Q13435 895 aaKnown RBP13.51□□□□□ -0.25
USP53-201ENST00000274030 NME9Q86XW9 330 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 CCDC83Q8IWF9 413 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 AIDAQ96BJ3 306 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 WWC2Q6AWC2 1192 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 ATAD2Q6PL18 1390 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 MCM4P33991 863 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 PRPF40BQ6NWY9 871 aaKnown RBP13.51□□□□□ -0.25
USP53-201ENST00000274030 NOL7Q9UMY1 257 aaKnown RBP13.51□□□□□ -0.25
USP53-201ENST00000274030 SEPT11Q9NVA2 429 aaKnown RBP13.51□□□□□ -0.25
USP53-201ENST00000274030 CTNNA3Q9UI47 895 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 CCDC82Q8N4S0 544 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 NUP62CLQ9H1M0 184 aa13.51□□□□□ -0.25
USP53-201ENST00000274030 TROQ12816 1431 aaPredicted RBP13.5□□□□□ -0.25
USP53-201ENST00000274030 IGHMBP2P38935 993 aaKnown RBP13.5□□□□□ -0.25
USP53-201ENST00000274030 ANKRD30BQ9BXX2 1392 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 MYD88Q99836 296 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 LARP6Q9BRS8 491 aaKnown RBP13.5□□□□□ -0.25
USP53-201ENST00000274030 MINDY4BA8MYZ0 360 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 NEFHP12036 1026 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 MAP7D2Q96T17 732 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 C11orf95C9JLR9 678 aaPredicted RBP13.5□□□□□ -0.25
USP53-201ENST00000274030 CCP110O43303 1012 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 IBSPP21815 317 aaPredicted RBP13.5□□□□□ -0.25
USP53-201ENST00000274030 EMILIN1Q9Y6C2 1016 aa13.5□□□□□ -0.25
USP53-201ENST00000274030 WDR97A6NE52 1622 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 DAPK1P53355 1430 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 SYCE3A1L190 88 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 MX1P20591 662 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 CCDC181Q5TID7 509 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 TSPYL1Q9H0U9 437 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 CCDC8Q9H0W5 538 aaPredicted RBP13.49□□□□□ -0.25
USP53-201ENST00000274030 CFAP45Q9UL16 551 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 MYO6Q9UM54 1294 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 CDKL5O76039 1030 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 RDXP35241 583 aaKnown RBP13.49□□□□□ -0.25
USP53-201ENST00000274030 MPRIPQ6WCQ1 1025 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 DACH1Q9UI36 760 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 NCAPD3P42695 1498 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 TAF7Q15545 349 aaPredicted RBP13.49□□□□□ -0.25
USP53-201ENST00000274030 CCDC112Q8NEF3 446 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 ERICH3Q5RHP9 1530 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 IMMTQ16891 758 aaKnown RBP13.49□□□□□ -0.25
USP53-201ENST00000274030 ZSCAN31Q96LW9 406 aaPredicted RBP13.49□□□□□ -0.25
USP53-201ENST00000274030 CENPHQ9H3R5 247 aa13.49□□□□□ -0.25
USP53-201ENST00000274030 GUCY1B3Q02153 619 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 PPP6R1Q9UPN7 881 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 SYNJ1O43426 1573 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 MPHOSPH10O00566 681 aaKnown RBP13.48□□□□□ -0.25
USP53-201ENST00000274030 DHX8Q14562 1220 aaKnown RBP13.48□□□□□ -0.25
USP53-201ENST00000274030 STARD3NLO95772 234 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 ZNF76P36508 570 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 HMGN5P82970 282 aaKnown RBP13.48□□□□□ -0.25
USP53-201ENST00000274030 DHX37Q8IY37 1157 aaKnown RBP13.48□□□□□ -0.25
USP53-201ENST00000274030 KIF1BPQ96EK5 621 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 CEP57L1Q8IYX8 460 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 FOXO3O43524 673 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 KRT32Q14532 448 aa13.48□□□□□ -0.25
USP53-201ENST00000274030 RARSP54136 660 aaKnown RBP13.47□□□□□ -0.25
USP53-201ENST00000274030 FAM193AP78312 1265 aa13.47□□□□□ -0.25
USP53-201ENST00000274030 EHBP1L1Q8N3D4 1523 aa13.47□□□□□ -0.25
USP53-201ENST00000274030 RPGRIP1LQ68CZ1 1315 aa13.47□□□□□ -0.25
USP53-201ENST00000274030 BMP2KQ9NSY1 1161 aaPredicted RBP13.46□□□□□ -0.25
USP53-201ENST00000274030 ANKRD62A6NC57 917 aa13.46□□□□□ -0.26
USP53-201ENST00000274030 LRRFIP2Q9Y608 721 aaKnown RBP13.46□□□□□ -0.26
USP53-201ENST00000274030 GLRX3O76003 335 aaKnown RBP13.45□□□□□ -0.26
USP53-201ENST00000274030 ADAMTS2O95450 1211 aa13.45□□□□□ -0.26
USP53-201ENST00000274030 IFIT1P09914 478 aaKnown RBP13.45□□□□□ -0.26
USP53-201ENST00000274030 CFAP100Q494V2 611 aa13.45□□□□□ -0.26
USP53-201ENST00000274030 TMOD3Q9NYL9 352 aa13.45□□□□□ -0.26
USP53-201ENST00000274030 PLEKHH2Q8IVE3 1493 aa13.45□□□□□ -0.26
USP53-201ENST00000274030 KLHL10Q6JEL2 608 aa13.45□□□□□ -0.26
USP53-201ENST00000274030 EIF5P55010 431 aaKnown RBP13.45□□□□□ -0.26
USP53-201ENST00000274030 MATR3P43243 847 aaKnown RBP eCLIP13.45□□□□□ -0.269e-7■■■■□ 20.5
USP53-201ENST00000274030 CDK13Q14004 1512 aaKnown RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 PPFIA3O75145 1194 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms