RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 NLRP2Q9NX02 1062 aa29.7■■■□□ 2.35
SMARCB1-201ENST00000263121 MAP3K5Q99683 1374 aa29.7■■■□□ 2.35
SMARCB1-201ENST00000263121 CRB1P82279 1406 aa29.69■■■□□ 2.34
SMARCB1-201ENST00000263121 GNAT3A8MTJ3 354 aa29.69■■■□□ 2.34
SMARCB1-201ENST00000263121 CSB-PGBD3P0DP91 1061 aa29.69■■■□□ 2.34
SMARCB1-201ENST00000263121 EXOSC9Q06265 439 aaKnown RBP29.69■■■□□ 2.34
SMARCB1-201ENST00000263121 RTF1Q92541 710 aaKnown RBP29.68■■■□□ 2.34
SMARCB1-201ENST00000263121 PLEKHG2Q9H7P9 1386 aa29.67■■■□□ 2.34
SMARCB1-201ENST00000263121 AMOTQ4VCS5 1084 aa29.67■■■□□ 2.34
SMARCB1-201ENST00000263121 LAS1LQ9Y4W2 734 aaKnown RBP29.67■■■□□ 2.34
SMARCB1-201ENST00000263121 WDR17Q8IZU2 1322 aa29.67■■■□□ 2.34
SMARCB1-201ENST00000263121 PLEKHO1Q53GL0 409 aaPredicted RBP29.66■■■□□ 2.34
SMARCB1-201ENST00000263121 CERKQ8TCT0 537 aa29.66■■■□□ 2.34
SMARCB1-201ENST00000263121 MBIPQ9NS73 344 aa29.66■■■□□ 2.34
SMARCB1-201ENST00000263121 COL14A1Q05707 1796 aaKnown RBP29.65■■■□□ 2.34
SMARCB1-201ENST00000263121 RARSP54136 660 aaKnown RBP29.64■■■□□ 2.34
SMARCB1-201ENST00000263121 MEGF6O75095 1541 aa29.62■■■□□ 2.33
SMARCB1-201ENST00000263121 CHL1O00533 1208 aa29.62■■■□□ 2.33
SMARCB1-201ENST00000263121 BCAR3O75815 825 aa29.62■■■□□ 2.33
SMARCB1-201ENST00000263121 PLIN1O60240 522 aa29.61■■■□□ 2.33
SMARCB1-201ENST00000263121 RAPGEF4Q8WZA2 1011 aa29.61■■■□□ 2.33
SMARCB1-201ENST00000263121 ZNF530Q6P9A1 599 aaPredicted RBP29.6■■■□□ 2.33
SMARCB1-201ENST00000263121 AKAP4Q5JQC9 854 aa29.6■■■□□ 2.33
SMARCB1-201ENST00000263121 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.6■■■□□ 2.33
SMARCB1-201ENST00000263121 IL17REQ8NFR9 667 aa29.6■■■□□ 2.33
SMARCB1-201ENST00000263121 CEMIPQ8WUJ3 1361 aa29.59■■■□□ 2.33
SMARCB1-201ENST00000263121 TATP17735 454 aaPredicted RBP29.58■■■□□ 2.33
SMARCB1-201ENST00000263121 PKD1L3Q7Z443 1732 aa29.58■■■□□ 2.33
SMARCB1-201ENST00000263121 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.57■■■□□ 2.32
SMARCB1-201ENST00000263121 TOM1L2Q6ZVM7 507 aa29.56■■■□□ 2.32
SMARCB1-201ENST00000263121 CARD10Q9BWT7 1032 aa29.56■■■□□ 2.32
SMARCB1-201ENST00000263121 ADAMTS7Q9UKP4 1686 aa29.55■■■□□ 2.32
SMARCB1-201ENST00000263121 PARP4Q9UKK3 1724 aaKnown RBP29.55■■■□□ 2.32
SMARCB1-201ENST00000263121 OVOS2A0A0G2JMS6 1433 aa29.54■■■□□ 2.32
SMARCB1-201ENST00000263121 ZNF428Q96B54 188 aa29.54■■■□□ 2.32
SMARCB1-201ENST00000263121 C1orf141Q5JVX7 400 aa29.53■■■□□ 2.32
SMARCB1-201ENST00000263121 BTG4Q9NY30 223 aa29.53■■■□□ 2.32
SMARCB1-201ENST00000263121 EVA1CP58658 441 aa29.53■■■□□ 2.32
SMARCB1-201ENST00000263121 LARP1Q6PKG0 1096 aaKnown RBP29.53■■■□□ 2.32
SMARCB1-201ENST00000263121 STRN4Q9NRL3 753 aa29.53■■■□□ 2.32
SMARCB1-201ENST00000263121 VIRMAQ69YN4 1812 aaKnown RBP29.52■■■□□ 2.32
SMARCB1-201ENST00000263121 SPG7Q9UQ90 795 aa29.52■■■□□ 2.32
SMARCB1-201ENST00000263121 VAMP4O75379 141 aa29.51■■■□□ 2.31
SMARCB1-201ENST00000263121 TSPYL6Q8N831 410 aa29.51■■■□□ 2.31
SMARCB1-201ENST00000263121 BABAM1Q9NWV8 329 aa29.51■■■□□ 2.31
SMARCB1-201ENST00000263121 PPP4R2Q9NY27 417 aa29.51■■■□□ 2.31
SMARCB1-201ENST00000263121 PLCH1Q4KWH8 1693 aa29.51■■■□□ 2.31
SMARCB1-201ENST00000263121 C20orf194Q5TEA3 1177 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 C8orf58Q8NAV2 365 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 LGR6Q9HBX8 967 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 ALDH1L2Q3SY69 923 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 SSH1Q8WYL5 1049 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 BCL2L13Q9BXK5 485 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 TSPYL4Q9UJ04 414 aa29.5■■■□□ 2.31
SMARCB1-201ENST00000263121 TAF7Q15545 349 aaPredicted RBP29.49■■■□□ 2.31
SMARCB1-201ENST00000263121 TWISTNBQ3B726 338 aaPredicted RBP29.48■■■□□ 2.31
SMARCB1-201ENST00000263121 MIS18AQ9NYP9 233 aa29.48■■■□□ 2.31
SMARCB1-201ENST00000263121 JCADQ9P266 1359 aa29.48■■■□□ 2.31
SMARCB1-201ENST00000263121 RNMTO43148 476 aaKnown RBP29.47■■■□□ 2.31
SMARCB1-201ENST00000263121 MPRIPQ6WCQ1 1025 aa29.47■■■□□ 2.31
SMARCB1-201ENST00000263121 SMC4Q9NTJ3 1288 aa29.47■■■□□ 2.31
SMARCB1-201ENST00000263121 EXOC6Q8TAG9 804 aa29.47■■■□□ 2.31
SMARCB1-201ENST00000263121 NRAPQ86VF7 1730 aa29.46■■■□□ 2.31
SMARCB1-201ENST00000263121 PHKG2P15735 406 aa29.46■■■□□ 2.31
SMARCB1-201ENST00000263121 SCN11AQ9UI33 1791 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 ADAMTS2O95450 1211 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 PDE3AQ14432 1141 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 CRBNQ96SW2 442 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 SIPA1L3O60292 1781 aaPredicted RBP29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 KDM3BQ7LBC6 1761 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 ELL2O00472 640 aaPredicted RBP29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 IL2RBP14784 551 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 BRPF1P55201 1214 aaPredicted RBP29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 IFNL2Q8IZJ0 200 aa29.44■■■□□ 2.3
SMARCB1-201ENST00000263121 KRT24Q2M2I5 525 aa29.43■■■□□ 2.3
SMARCB1-201ENST00000263121 FRAT1Q92837 279 aaPredicted RBP29.43■■■□□ 2.3
SMARCB1-201ENST00000263121 KDM6AO15550 1401 aaPredicted RBP29.42■■■□□ 2.3
SMARCB1-201ENST00000263121 NUTM2BA6NNL0 878 aaPredicted RBP29.42■■■□□ 2.3
SMARCB1-201ENST00000263121 NUTM2EB1AL46 878 aaPredicted RBP29.42■■■□□ 2.3
SMARCB1-201ENST00000263121 CANXP27824 592 aaKnown RBP29.42■■■□□ 2.3
SMARCB1-201ENST00000263121 NUTM2AQ8IVF1 878 aaPredicted RBP29.42■■■□□ 2.3
SMARCB1-201ENST00000263121 NWD2Q9ULI1 1742 aa29.41■■■□□ 2.3
SMARCB1-201ENST00000263121 CYP27B1O15528 508 aa29.41■■■□□ 2.3
SMARCB1-201ENST00000263121 TEFQ10587 303 aa29.41■■■□□ 2.3
SMARCB1-201ENST00000263121 SHANK3Q9BYB0 1731 aa29.41■■■□□ 2.3
SMARCB1-201ENST00000263121 KIF16BQ96L93 1317 aa29.39■■■□□ 2.3
SMARCB1-201ENST00000263121 ZCRB1Q8TBF4 217 aaKnown RBP29.39■■■□□ 2.3
SMARCB1-201ENST00000263121 SLIT2O94813 1529 aa29.38■■■□□ 2.29
SMARCB1-201ENST00000263121 ZKSCAN2Q63HK3 967 aa29.38■■■□□ 2.29
SMARCB1-201ENST00000263121 DISP2A7MBM2 1401 aa29.38■■■□□ 2.29
SMARCB1-201ENST00000263121 PCDH11XQ9BZA7 1347 aa29.38■■■□□ 2.29
SMARCB1-201ENST00000263121 PCDH11YQ9BZA8 1340 aa29.38■■■□□ 2.29
SMARCB1-201ENST00000263121 MRPL50Q8N5N7 158 aaKnown RBP29.37■■■□□ 2.29
SMARCB1-201ENST00000263121 MRC1P22897 1456 aa29.37■■■□□ 2.29
SMARCB1-201ENST00000263121 HSP90AB1P08238 724 aaKnown RBP29.36■■■□□ 2.29
SMARCB1-201ENST00000263121 DCAF5Q96JK2 942 aa29.36■■■□□ 2.29
SMARCB1-201ENST00000263121 WNK3Q9BYP7 1800 aa29.36■■■□□ 2.29
SMARCB1-201ENST00000263121 NOB1Q9ULX3 412 aaKnown RBP29.35■■■□□ 2.29
SMARCB1-201ENST00000263121 SOS1Q07889 1333 aaPredicted RBP29.35■■■□□ 2.29
SMARCB1-201ENST00000263121 USP35Q9P2H5 1018 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms