RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SMC2O95347 1197 aa22.59■■□□□ 1.21
UPF1-201ENST00000262803 MAP4K4O95819 1239 aaPredicted RBP22.59■■□□□ 1.21
UPF1-201ENST00000262803 C20orf194Q5TEA3 1177 aa22.59■■□□□ 1.21
UPF1-201ENST00000262803 FAM177BA6PVY3 158 aa22.58■■□□□ 1.21
UPF1-201ENST00000262803 SRGAP3O43295 1099 aa22.58■■□□□ 1.21
UPF1-201ENST00000262803 PCF11O94913 1555 aaKnown RBP22.58■■□□□ 1.2
UPF1-201ENST00000262803 STK3Q13188 491 aa22.57■■□□□ 1.2
UPF1-201ENST00000262803 CCDC192P0DO97 292 aa22.57■■□□□ 1.2
UPF1-201ENST00000262803 AKAP2Q9Y2D5 859 aa22.57■■□□□ 1.2
UPF1-201ENST00000262803 HMGN5P82970 282 aaKnown RBP22.57■■□□□ 1.2
UPF1-201ENST00000262803 MTMR7Q9Y216 660 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 WDHD1O75717 1129 aaPredicted RBP22.56■■□□□ 1.2
UPF1-201ENST00000262803 RAPGEF3O95398 923 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 KRT85P78386 507 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 CWC15Q9P013 229 aaKnown RBP22.56■■□□□ 1.2
UPF1-201ENST00000262803 SPC24Q8NBT2 197 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 PAF1Q8N7H5 531 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
UPF1-201ENST00000262803 IL1RAPL2Q9NP60 686 aa22.55■■□□□ 1.2
UPF1-201ENST00000262803 RARSP54136 660 aaKnown RBP22.55■■□□□ 1.2
UPF1-201ENST00000262803 UBAC1Q9BSL1 405 aa22.55■■□□□ 1.2
UPF1-201ENST00000262803 LARP1BQ659C4 914 aaKnown RBP22.55■■□□□ 1.2
UPF1-201ENST00000262803 BTBD11A6QL63 1104 aa22.55■■□□□ 1.2
UPF1-201ENST00000262803 PDCL3Q9H2J4 239 aa22.55■■□□□ 1.2
UPF1-201ENST00000262803 KIAA0586Q9BVV6 1533 aa22.55■■□□□ 1.2
UPF1-201ENST00000262803 DDX54Q8TDD1 881 aaKnown RBP22.54■■□□□ 1.2
UPF1-201ENST00000262803 CEP131Q9UPN4 1083 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 AMOTQ4VCS5 1084 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 PPFIBP1Q86W92 1011 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 SKAP1Q86WV1 359 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 HSP90AB3PQ58FF7 597 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 THUMPD2Q9BTF0 503 aaKnown RBP22.54■■□□□ 1.2
UPF1-201ENST00000262803 CFAP45Q9UL16 551 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 ABCC11Q96J66 1382 aa22.54■■□□□ 1.2
UPF1-201ENST00000262803 CCDC191Q8NCU4 936 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 BLOC1S2Q6QNY1 142 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 AACSQ86V21 672 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 TNMDQ9H2S6 317 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 PPP6R1Q9UPN7 881 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 SSH1Q8WYL5 1049 aa22.53■■□□□ 1.2
UPF1-201ENST00000262803 ABCC5O15440 1437 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 RAB11FIP3O75154 756 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 SLC26A8Q96RN1 970 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 LRPPRCP42704 1394 aaKnown RBP22.52■■□□□ 1.2
UPF1-201ENST00000262803 ARHGEF11O15085 1522 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 GNAT3A8MTJ3 354 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 IQCEQ6IPM2 695 aa22.52■■□□□ 1.2
UPF1-201ENST00000262803 ATP2B2Q01814 1243 aa22.51■■□□□ 1.19
UPF1-201ENST00000262803 MPNDQ8N594 471 aa22.51■■□□□ 1.19
UPF1-201ENST00000262803 CCDC61Q9Y6R9 512 aa22.51■■□□□ 1.19
UPF1-201ENST00000262803 CWC27Q6UX04 472 aaKnown RBP22.51■■□□□ 1.19
UPF1-201ENST00000262803 ME1P48163 572 aa22.51■■□□□ 1.19
UPF1-201ENST00000262803 TNIP1Q15025 636 aa22.51■■□□□ 1.19
UPF1-201ENST00000262803 MPHOSPH10O00566 681 aaKnown RBP22.5■■□□□ 1.19
UPF1-201ENST00000262803 MYL6BP14649 208 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 TDO2P48775 406 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 EXOC6BQ9Y2D4 811 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 TTLL5Q6EMB2 1281 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 JAKMIP1Q96N16 626 aaKnown RBP22.5■■□□□ 1.19
UPF1-201ENST00000262803 PTPN23Q9H3S7 1636 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 RBM5P52756 815 aaKnown RBP eCLIP22.5■■□□□ 1.195e-7■■■■□ 22.8
UPF1-201ENST00000262803 PDRG1Q9NUG6 133 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 CAMSAP2Q08AD1 1489 aa22.5■■□□□ 1.19
UPF1-201ENST00000262803 NKTRP30414 1462 aaKnown RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 PATL2C9JE40 543 aaKnown RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 NCOA1Q15788 1441 aa22.49■■□□□ 1.19
UPF1-201ENST00000262803 NUDT16Q96DE0 195 aaKnown RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 ABCA10Q8WWZ4 1543 aa22.49■■□□□ 1.19
UPF1-201ENST00000262803 NUTM2BA6NNL0 878 aaPredicted RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 NUTM2EB1AL46 878 aaPredicted RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 NUTM2AQ8IVF1 878 aaPredicted RBP22.49■■□□□ 1.19
UPF1-201ENST00000262803 SLF2Q8IX21 1173 aa22.49■■□□□ 1.19
UPF1-201ENST00000262803 IMMTQ16891 758 aaKnown RBP22.48■■□□□ 1.19
UPF1-201ENST00000262803 RAI14Q9P0K7 980 aa22.48■■□□□ 1.19
UPF1-201ENST00000262803 SERPINC1P01008 464 aa22.47■■□□□ 1.19
UPF1-201ENST00000262803 DEF6Q9H4E7 631 aa22.47■■□□□ 1.19
UPF1-201ENST00000262803 MAP3K1Q13233 1512 aa22.47■■□□□ 1.19
UPF1-201ENST00000262803 LARP1Q6PKG0 1096 aaKnown RBP22.47■■□□□ 1.19
UPF1-201ENST00000262803 ESPNB1AK53 854 aa22.47■■□□□ 1.19
UPF1-201ENST00000262803 ALDH1L2Q3SY69 923 aa22.47■■□□□ 1.19
UPF1-201ENST00000262803 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
UPF1-201ENST00000262803 GOLGA6L10A6NI86 522 aa22.46■■□□□ 1.19
UPF1-201ENST00000262803 POTEJP0CG39 1038 aa22.46■■□□□ 1.19
UPF1-201ENST00000262803 RBM10P98175 930 aaKnown RBP22.46■■□□□ 1.19
UPF1-201ENST00000262803 IQGAP2Q13576 1575 aa22.46■■□□□ 1.19
UPF1-201ENST00000262803 PHAXQ9H814 394 aaKnown RBP22.46■■□□□ 1.19
UPF1-201ENST00000262803 BRPF1P55201 1214 aaPredicted RBP22.46■■□□□ 1.19
UPF1-201ENST00000262803 DUSP27Q5VZP5 1158 aa22.45■■□□□ 1.19
UPF1-201ENST00000262803 SPATA32Q96LK8 384 aa22.45■■□□□ 1.19
UPF1-201ENST00000262803 SMTNL1A8MU46 457 aa22.45■■□□□ 1.18
UPF1-201ENST00000262803 IFIT1P09914 478 aaKnown RBP22.45■■□□□ 1.18
UPF1-201ENST00000262803 MCM10Q7L590 875 aa22.45■■□□□ 1.18
UPF1-201ENST00000262803 MIS18AQ9NYP9 233 aa22.45■■□□□ 1.18
UPF1-201ENST00000262803 LRP2BPQ9P2M1 347 aa22.45■■□□□ 1.18
UPF1-201ENST00000262803 CAVIN4Q5BKX8 364 aa22.45■■□□□ 1.18
UPF1-201ENST00000262803 PPP1R12BO60237 982 aaPredicted RBP22.45■■□□□ 1.18
UPF1-201ENST00000262803 NUTM1Q86Y26 1132 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 CC2D2AQ9P2K1 1620 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 CCDC196A0A1B0GTZ2 297 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 ZNF76P36508 570 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms