RNA–Protein interactions for RNA: ENST00000227503.13

SF1-201, Transcript of splicing factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SF1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-201ENST00000227503 RIMBP3BA6NNM3 1639 aa17.34■□□□□ 0.37
SF1-201ENST00000227503 RIMBP3Q9UFD9 1639 aa17.34■□□□□ 0.37
SF1-201ENST00000227503 CPSF1Q10570 1443 aaKnown RBP17.33■□□□□ 0.37
SF1-201ENST00000227503 VAMP4O75379 141 aa17.33■□□□□ 0.36
SF1-201ENST00000227503 HMOX1P09601 288 aa17.33■□□□□ 0.36
SF1-201ENST00000227503 FOXD4L6Q3SYB3 417 aaPredicted RBP17.33■□□□□ 0.36
SF1-201ENST00000227503 FOXD4L3Q6VB84 417 aaPredicted RBP17.33■□□□□ 0.36
SF1-201ENST00000227503 BMP2KLQ5H9B9 411 aa17.33■□□□□ 0.36
SF1-201ENST00000227503 RIMS2Q9UQ26 1411 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 MAP2P11137 1827 aaKnown RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 IL13P35225 146 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 SASS6Q6UVJ0 657 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 MRPL50Q8N5N7 158 aaKnown RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 THUMPD2Q9BTF0 503 aaKnown RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 EMILIN1Q9Y6C2 1016 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 PIK3R4Q99570 1358 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 ZBTB7BO15156 539 aaPredicted RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 IGSF3O75054 1194 aa17.32■□□□□ 0.36
SF1-201ENST00000227503 PTMAP06454 111 aaKnown RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 IBTKQ9P2D0 1353 aaPredicted RBP17.32■□□□□ 0.36
SF1-201ENST00000227503 ZNF853P0CG23 659 aa17.31■□□□□ 0.36
SF1-201ENST00000227503 ZSCAN20P17040 1043 aaPredicted RBP17.31■□□□□ 0.36
SF1-201ENST00000227503 TSPYL6Q8N831 410 aa17.31■□□□□ 0.36
SF1-201ENST00000227503 PPP6R1Q9UPN7 881 aa17.31■□□□□ 0.36
SF1-201ENST00000227503 PTCH1Q13635 1447 aa17.31■□□□□ 0.36
SF1-201ENST00000227503 ARHGAP45Q92619 1136 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 EDC4Q6P2E9 1401 aaKnown RBP17.3■□□□□ 0.36
SF1-201ENST00000227503 SPATA31D1Q6ZQQ2 1576 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 REREQ9P2R6 1566 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 AGLP35573 1532 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 IFT57Q9NWB7 429 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 NME9Q86XW9 330 aa17.3■□□□□ 0.36
SF1-201ENST00000227503 CDK12Q9NYV4 1490 aaPredicted RBP17.29■□□□□ 0.36
SF1-201ENST00000227503 HS1BP3Q53T59 392 aa17.29■□□□□ 0.36
SF1-201ENST00000227503 CCDC94Q9BW85 323 aaPredicted RBP17.29■□□□□ 0.36
SF1-201ENST00000227503 WASLO00401 505 aaPredicted RBP17.29■□□□□ 0.36
SF1-201ENST00000227503 GNAI1P63096 354 aa17.29■□□□□ 0.36
SF1-201ENST00000227503 ZNF710Q8N1W2 664 aa17.29■□□□□ 0.36
SF1-201ENST00000227503 ZRANB1Q9UGI0 708 aa17.29■□□□□ 0.36
SF1-201ENST00000227503 ZDHHC9Q9Y397 364 aa17.29■□□□□ 0.36
SF1-201ENST00000227503 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.29■□□□□ 0.368e-9■□□□□ 10.7
SF1-201ENST00000227503 AATKQ6ZMQ8 1374 aa17.28■□□□□ 0.36
SF1-201ENST00000227503 DMTNQ08495 405 aa17.28■□□□□ 0.36
SF1-201ENST00000227503 MBIPQ9NS73 344 aa17.28■□□□□ 0.36
SF1-201ENST00000227503 SPDYE4A6NLX3 237 aa17.28■□□□□ 0.36
SF1-201ENST00000227503 CLEC17AQ6ZS10 378 aa17.28■□□□□ 0.36
SF1-201ENST00000227503 GSPT1P15170 499 aaKnown RBP17.27■□□□□ 0.36
SF1-201ENST00000227503 NRXN3Q9Y4C0 1643 aa17.27■□□□□ 0.36
SF1-201ENST00000227503 ELL2O00472 640 aaPredicted RBP17.27■□□□□ 0.36
SF1-201ENST00000227503 CSPP1Q1MSJ5 1256 aa17.27■□□□□ 0.36
SF1-201ENST00000227503 ABCC4O15439 1325 aa17.27■□□□□ 0.35
SF1-201ENST00000227503 ATP2B3Q16720 1220 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 APBB1O00213 710 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 C16orf71Q8IYS4 520 aaPredicted RBP17.26■□□□□ 0.35
SF1-201ENST00000227503 CCDC39Q9UFE4 941 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 CYP2E1P05181 493 aaPredicted RBP17.26■□□□□ 0.35
SF1-201ENST00000227503 LRSAM1Q6UWE0 723 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 GCC1Q96CN9 775 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 METP08581 1390 aa17.26■□□□□ 0.35
SF1-201ENST00000227503 FGD1P98174 961 aa17.25■□□□□ 0.35
SF1-201ENST00000227503 FAM69CQ0P6D2 419 aa17.25■□□□□ 0.35
SF1-201ENST00000227503 SIRT2Q8IXJ6 389 aa17.25■□□□□ 0.35
SF1-201ENST00000227503 CHMP4BQ9H444 224 aaKnown RBP17.25■□□□□ 0.35
SF1-201ENST00000227503 CPS1P31327 1500 aa17.25■□□□□ 0.35
SF1-201ENST00000227503 NOL8Q76FK4 1167 aaKnown RBP17.25■□□□□ 0.35
SF1-201ENST00000227503 NUCB2P80303 420 aa17.24■□□□□ 0.35
SF1-201ENST00000227503 CFAP44Q96MT7 982 aa17.24■□□□□ 0.35
SF1-201ENST00000227503 C8orf58Q8NAV2 365 aa17.24■□□□□ 0.35
SF1-201ENST00000227503 NUDT16Q96DE0 195 aaKnown RBP17.24■□□□□ 0.35
SF1-201ENST00000227503 NCKAP5LQ9HCH0 1330 aa17.24■□□□□ 0.35
SF1-201ENST00000227503 CDC45O75419 566 aa17.23■□□□□ 0.35
SF1-201ENST00000227503 TWISTNBQ3B726 338 aaPredicted RBP17.23■□□□□ 0.35
SF1-201ENST00000227503 PPP4R3BQ5MIZ7 849 aa17.23■□□□□ 0.35
SF1-201ENST00000227503 OTUD7AQ8TE49 926 aaPredicted RBP17.23■□□□□ 0.35
SF1-201ENST00000227503 GDPD2Q9HCC8 539 aa17.23■□□□□ 0.35
SF1-201ENST00000227503 TTC12Q9H892 705 aaPredicted RBP17.23■□□□□ 0.35
SF1-201ENST00000227503 DIP2BQ9P265 1576 aa17.23■□□□□ 0.35
SF1-201ENST00000227503 KIAA2012Q0VF49 1180 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 RRS1Q15050 365 aaKnown RBP17.22■□□□□ 0.35
SF1-201ENST00000227503 TXNDC2Q86VQ3 553 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 MTERF4Q7Z6M4 381 aaKnown RBP17.22■□□□□ 0.35
SF1-201ENST00000227503 COG3Q96JB2 828 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 MON2Q7Z3U7 1717 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 DLG5Q8TDM6 1919 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 LMOD3Q0VAK6 560 aa17.22■□□□□ 0.35
SF1-201ENST00000227503 FAM83GA6ND36 823 aa17.21■□□□□ 0.35
SF1-201ENST00000227503 MYRIPQ8NFW9 859 aa17.21■□□□□ 0.35
SF1-201ENST00000227503 CCDC61Q9Y6R9 512 aa17.21■□□□□ 0.35
SF1-201ENST00000227503 RABEP1Q15276 862 aa17.21■□□□□ 0.35
SF1-201ENST00000227503 SIRT1Q96EB6 747 aa17.2■□□□□ 0.34
SF1-201ENST00000227503 TECPR2O15040 1411 aa17.2■□□□□ 0.34
SF1-201ENST00000227503 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.19■□□□□ 0.34
SF1-201ENST00000227503 C3P01024 1663 aa17.19■□□□□ 0.34
SF1-201ENST00000227503 MLECQ14165 292 aa17.19■□□□□ 0.34
SF1-201ENST00000227503 API5Q9BZZ5 524 aaKnown RBP17.19■□□□□ 0.34
SF1-201ENST00000227503 DCTN1Q14203 1278 aa17.18■□□□□ 0.34
SF1-201ENST00000227503 USP25Q9UHP3 1055 aa17.18■□□□□ 0.34
SF1-201ENST00000227503 KNDC1Q76NI1 1749 aa17.18■□□□□ 0.34
SF1-201ENST00000227503 BBXQ8WY36 941 aaPredicted RBP17.18■□□□□ 0.34
SF1-201ENST00000227503 USP26Q9BXU7 913 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms