RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Maats1Q8BRC6 783 aa13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Smc1aQ9CU62 1233 aaKnown RBP13.91□□□□□ -0.18
Trim56-201ENSMUST00000054384 Jakmip3Q5DTN8 844 aa13.9□□□□□ -0.18
Trim56-201ENSMUST00000054384 Ttc19Q8CC21 365 aa13.9□□□□□ -0.18
Trim56-201ENSMUST00000054384 ImmtQ8CAQ8 757 aaKnown RBP13.9□□□□□ -0.18
Trim56-201ENSMUST00000054384 Flad1Q8R123 492 aa13.9□□□□□ -0.18
Trim56-201ENSMUST00000054384 Bbof1Q3V079 533 aa13.9□□□□□ -0.18
Trim56-201ENSMUST00000054384 Brms1Q99N20 246 aa13.9□□□□□ -0.19
Trim56-201ENSMUST00000054384 Stxbp4Q9WV89 557 aa13.9□□□□□ -0.19
Trim56-201ENSMUST00000054384 Phldb1Q6PDH0 1371 aaKnown RBP13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Pdia4P08003 638 aaKnown RBP13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cd109Q8R422 1442 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ccdc178Q8CDV0 866 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Nup133Q8R0G9 1155 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cfap69Q8BH53 942 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Smc1bQ920F6 1248 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Irgm2A0A140LIF8 407 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 AidaQ8C4Q6 305 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 ClasrpQ8CFC7 668 aa13.89□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gm21698A0A087WQP8 267 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 ZwintQ9CQU5 252 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Uri1Q3TLD5 531 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Sh3d21Q7TSG5 549 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Pip4k2bQ80XI4 416 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Dennd6aQ8BH65 605 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Trim34aQ99PP6 485 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Q9D9H8 365 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Znf710Q3U288 666 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Top1mtQ8R4U6 593 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gigyf1Q99MR1 1044 aaKnown RBP13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Hspa4Q61316 841 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Als2cr12Q8BVM7 383 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Myom3A2ABU4 1439 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 NinlQ6ZQ12 1394 aa13.88□□□□□ -0.19
Trim56-201ENSMUST00000054384 Dusp27Q148W8 1138 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 SrrtQ99MR6 875 aaKnown RBP13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Trim11Q99PQ2 467 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Tacc1Q6Y685 774 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Znf131Q8K3J5 619 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ripk4Q9ERK0 786 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 LrpprcQ6PB66 1392 aaKnown RBP13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Apaf1O88879 1249 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gimap6Q8K349 305 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cdc37l1Q9CZP7 335 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ctnnbl1Q9CWL8 563 aaKnown RBP13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gm21680A0A0G2JGR8 267 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 Speer4bQ9D9F7 267 aa13.87□□□□□ -0.19
Trim56-201ENSMUST00000054384 MvpQ9EQK5 861 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ces1hD3Z298 562 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cbx1P83917 185 aaKnown RBP13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Abcf1Q6P542 837 aaKnown RBP13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Nop53Q8BK35 484 aaKnown RBP13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cetn1P41209 172 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ctr9Q62018 1173 aaKnown RBP13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Rapgef4Q9EQZ6 1011 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cpa2Q504N0 417 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Crybg2B7ZCC2 1516 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ppfibp2O35711 882 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 DesP31001 469 aaKnown RBP13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Map3k13Q1HKZ5 959 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cfap65Q3V0B4 1847 aa13.86□□□□□ -0.19
Trim56-201ENSMUST00000054384 Exoc6bA6H5Z3 810 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Nfxl1E9Q8I7 918 aaKnown RBP13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Btbd11Q6GQW0 1109 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ddx58Q6Q899 926 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Fkbp5Q64378 456 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Naa15Q80UM3 865 aaKnown RBP13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Acbd3Q8BMP6 525 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ptpdc1Q6NZK8 747 aa13.85□□□□□ -0.19
Trim56-201ENSMUST00000054384 Pde4bB1AWC9 736 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cacna2d4Q5RJF7 1116 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Brf1Q8CFK2 676 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cct4P80315 539 aaKnown RBP13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 SlmapQ3URD3 845 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ccdc158Q8CDI6 1109 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Anapc15-psA0A140T8L6 141 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gm21663A0A0G2JE01 267 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 5031410I06RikE9Q4E0 267 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gm5862K7N5V5 267 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gm10220K7N660 267 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Eif3j1Q3UGC7 261 aaKnown RBP13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Eif3j2Q66JS6 263 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Cep55Q8BT07 462 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ccdc73Q8CDM4 1066 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Pof1bQ8K4L4 587 aa13.84□□□□□ -0.19
Trim56-201ENSMUST00000054384 Zfp42P22227 288 aa13.83□□□□□ -0.19
Trim56-201ENSMUST00000054384 4921530L21RikQ9CQ47 274 aa13.83□□□□□ -0.19
Trim56-201ENSMUST00000054384 Hvcn1Q3U2S8 269 aa13.83□□□□□ -0.19
Trim56-201ENSMUST00000054384 Q7TT23 1179 aa13.83□□□□□ -0.19
Trim56-201ENSMUST00000054384 Ccdc141E9Q8Q6 1531 aa13.83□□□□□ -0.19
Trim56-201ENSMUST00000054384 Gle1Q8R322 699 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Gm44503E9PYU5 387 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Igf2bp2Q5SF07 592 aaKnown RBP13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Ctnna2Q61301 953 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Txndc16Q7TN22 820 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Gas2l3Q3UWW6 683 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Calml4Q91WQ9 153 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 IqcgQ80W32 419 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Iqgap2Q3UQ44 1575 aa13.83□□□□□ -0.2
Trim56-201ENSMUST00000054384 Top2aQ01320 1528 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 22,080 RNA–protein pairs in 26.9 ms