RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 GJA5P36382 358 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 OTUD4Q01804 1114 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CYP4F3Q08477 520 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 STX5Q13190 355 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CST6Q15828 149 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PRAMEF14Q5SWL7 426 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 C9orf64Q5T6V5 341 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 TEDDM1Q5T9Z0 273 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 TMPRSS11BQ86T26 416 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PCDH20Q8N6Y1 951 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PTPN18Q99952 460 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KCNH6Q9H252 994 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 SUV39H2Q9H5I1 410 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PTGES2Q9H7Z7 377 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 IL1RL2Q9HB29 575 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CIDEBQ9UHD4 219 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 SLIT3O75094 1523 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 ADAMTSL3P82987 1691 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KCNU1A8MYU2 1149 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 FOXP2O15409 715 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CCNE2O96020 404 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 C5AR1P21730 350 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 MAOBP27338 520 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 RXRGP48443 463 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CLCNKAP51800 687 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 C1QBPQ07021 282 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 MPP3Q13368 585 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 STXBP5Q5T5C0 1151 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 MROH9Q5TGP6 573 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF280BQ86YH2 543 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CAMK1DQ8IU85 385 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KCT2Q8NC54 265 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 SELENOMQ8WWX9 145 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 EZH1Q92800 747 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PRAMEF26H0Y7S4 382 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 H3BNC9 293 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 M0R3G1 203 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KIAA0355O15063 1070 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 REM1O75628 298 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 GLI1P08151 1106 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PNMA6AP0CW24 399 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CD38P28907 300 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 BEND6Q5SZJ8 279 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KRT77Q7Z794 578 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 TRIM69Q86WT6 500 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 OR56A4Q8NGH8 313 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 SNX33Q8WV41 574 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 TSACCQ96A04 125 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 UNKQ9C0B0 810 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CCDC90BQ9GZT6 254 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 FGF1P05230 155 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 NUDT17P0C025 328 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 ABCG1P45844 678 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 EIF4HQ15056 248 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 C1orf189Q5VU69 101 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 BRAT1Q6PJG6 821 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 RFX8Q6ZV50 586 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 PACS2Q86VP3 889 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 TP53INP2Q8IXH6 220 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 CYP4Z2PQ8N1L4 340 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 UBR7Q8N806 425 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 GOLPH3LQ9H4A5 285 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 FZD3Q9NPG1 666 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 EQTNQ9NQ60 294 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 HS3ST4Q9Y661 456 aa9.18□□□□□ -0.94
LIMCH1-202ENST00000381753 KMOO15229 486 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 IRF2P14316 349 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 YBEYP58557 167 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MRPS21P82921 87 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MCL1Q07820 350 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SEMA3AQ14563 771 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ANGPT1Q15389 498 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ATP6AP1LQ52LC2 224 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ASTLQ6HA08 431 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MAMDC4Q6UXC1 1216 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 VGLL2Q8N8G2 317 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 PCYOX1LQ8NBM8 494 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CAMKVQ8NCB2 501 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 HIPK4Q8NE63 616 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MCMBPQ9BTE3 642 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SHCBP1LQ9BZQ2 653 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 KCND3Q9UK17 655 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 RNF103-CHMP3A0A140T963 221 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 TSPAN6O43657 245 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CPN2P22792 545 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 HSD17B3P37058 310 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SOX9P48436 509 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CASP7P55210 303 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 MTAPQ13126 283 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 CAMK1Q14012 370 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 NT5DC1Q5TFE4 455 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SPOCD1Q6ZMY3 1216 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 KCTD8Q6ZWB6 473 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 ANLNQ9NQW6 1124 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 GEMIN8Q9NWZ8 242 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 NDE1Q9NXR1 346 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 C15orf38-AP3S2A0A0A6YYH1 394 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 SMNDC1O75940 238 aaKnown RBP eCLIP9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 OR2B3O76000 313 aa9.17□□□□□ -0.94
LIMCH1-202ENST00000381753 RPL22P35268 128 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 196.6 ms