RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CENPIQ92674 756 aaPredicted RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 AKT1S1Q96B36 256 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 TADA1Q96BN2 335 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 P2RX7Q99572 595 aaKnown RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 MKS1Q9NXB0 559 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 SH3BP4Q9P0V3 963 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 PADI4Q9UM07 663 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 OTCP00480 354 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 IL1BP01584 269 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 ZNF37AP17032 561 aaPredicted RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 UGT1A6P19224 532 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 UGT1A1P22309 533 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 UGT1A4P22310 534 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 UGT1A3P35503 534 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 UGT1A5P35504 534 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 GRIA1P42261 906 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 ACADVLP49748 655 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 TRIM32Q13049 653 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 PWP1Q13610 501 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 ZNF829Q3KNS6 432 aaPredicted RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 C2orf69Q8N8R5 385 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 SAMHD1Q9Y3Z3 626 aaKnown RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 PPP2R3BQ9Y5P8 575 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 BAZ2AQ9UIF9 1905 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 PTPN3P26045 913 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 UBAP2Q5T6F2 1119 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 DQX1Q8TE96 717 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 DNAJB3Q8WWF6 145 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 REXO5Q96IC2 774 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 PHF12Q96QT6 1004 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 HES2Q9Y543 173 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 SESN1Q9Y6P5 492 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 MYL12BO14950 172 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 CNPP09543 421 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 NMBRP28336 390 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 TTPAP49638 278 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 PCBP1Q15365 356 aaKnown RBP eCLIP19.32■□□□□ 0.68
USP48-201ENST00000308271 AFTPHQ6ULP2 937 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 MINDY2Q8NBR6 621 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 CANT1Q8WVQ1 401 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 PPM1MQ96MI6 270 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 KLHL20Q9Y2M5 609 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 TRIM43BA6NCK2 446 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 DPYSL4O14531 572 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 GLUD2P49448 558 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 CDH15P55291 814 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 CDC42P60953 191 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 SLC39A4Q6P5W5 647 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 HEXDCQ8WVB3 486 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 HTRA1Q92743 480 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 UTP4Q969X6 686 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 SIGLEC10Q96LC7 697 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 WBP11Q9Y2W2 641 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 PTCH2Q9Y6C5 1203 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 PCLAFQ15004 111 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 PHKG1Q16816 387 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 SLC9A4Q6AI14 798 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 DCLRE1AQ6PJP8 1040 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 ADAMTSL2Q86TH1 951 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 SELENOMQ8WWX9 145 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 PARK7Q99497 189 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 TLR8Q9NR97 1041 aaKnown RBP19.32■□□□□ 0.68
USP48-201ENST00000308271 SLC17A6Q9P2U8 582 aa19.32■□□□□ 0.68
USP48-201ENST00000308271 SLC28A1O00337 649 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 DGKAP23743 735 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 L1CAMP32004 1257 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 TAS2R39P59534 338 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 OTOP3Q7RTS5 596 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 ZDHHC14Q8IZN3 488 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 PYROXD2Q8N2H3 581 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 ELMOD1Q8N336 334 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 GATA6Q92908 595 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 TCAF1Q9Y4C2 921 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 EI24O14681 340 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 ANGPTL1O95841 491 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 MT-ND1P03886 318 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 MAGEA10P43363 369 aaPredicted RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 ANXA11P50995 505 aaKnown RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 P2RY8Q86VZ1 359 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 SYT12Q8IV01 421 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 HASPINQ8TF76 798 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 ATP13A1Q9HD20 1204 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 TMEM9Q9P0T7 183 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 UBA2Q9UBT2 640 aaPredicted RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 ADAMTS6Q9UKP5 1117 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 STX16-NPEPL1H3BU86 382 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 RGS10O43665 173 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 CCNKO75909 580 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 ECT2LQ008S8 904 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 TDRD1Q9BXT4 1180 aaKnown RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 RNF19AQ9NV58 838 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 IPPQ9Y573 584 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 SNX8Q9Y5X2 465 aa19.31■□□□□ 0.68
USP48-201ENST00000308271 MRPL42Q9Y6G3 142 aaKnown RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 PARP4Q9UKK3 1724 aaKnown RBP19.31■□□□□ 0.68
USP48-201ENST00000308271 BCKDKO14874 412 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 OLR1P78380 273 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 SMYD1Q8NB12 490 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 SEMA3CQ99985 751 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 H3BMM5 538 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms