RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 EXOC2Q96KP1 924 aa16.51■□□□□ 0.23
SH3RF1-201ENST00000284637 AAASQ9NRG9 546 aa16.51■□□□□ 0.23
SH3RF1-201ENST00000284637 ING3Q9NXR8 418 aa16.51■□□□□ 0.23
SH3RF1-201ENST00000284637 SNX6Q9UNH7 406 aa16.51■□□□□ 0.23
SH3RF1-201ENST00000284637 VWA7Q9Y334 891 aa16.51■□□□□ 0.23
SH3RF1-201ENST00000284637 NRG1Q02297 640 aaPredicted RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 INTS11Q5TA45 600 aaKnown RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 DET1Q7L5Y6 550 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 SPPL2CQ8IUH8 684 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 B3GALT6Q96L58 329 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 ING4Q9UNL4 249 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 A0A0J9YYE9 177 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 TMCC2O75069 709 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 KLHL18O94889 574 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 SMYD1Q8NB12 490 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 MYDGFQ969H8 173 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 ABHD16BQ9H3Z7 469 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 CASZ1Q86V15 1759 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 RBM47A0AV96 593 aaKnown RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 LRATO95237 230 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 H6PDO95479 791 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 MLPHQ9BV36 600 aaPredicted RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 SSU72Q9NP77 194 aaKnown RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 OGDHLQ9ULD0 1010 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 BCL9O00512 1426 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 UBXN8O00124 270 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 PSMD11O00231 422 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 GUCY1B2O75343 617 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 OR6B1O95007 311 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 IDO1P14902 403 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 RPL26P61254 145 aaKnown RBP16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 COPZ1P61923 177 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 GBE1Q04446 702 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 ADGRD1Q6QNK2 874 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 C16orf62Q7Z3J2 963 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 ARMC8Q8IUR7 673 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 RHOJQ9H4E5 214 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 KANSL3Q9P2N6 904 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 TBC1D30Q9Y2I9 924 aa16.5■□□□□ 0.23
SH3RF1-201ENST00000284637 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 TRAFD1O14545 582 aaPredicted RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 PTPRAP18433 802 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 PPIL2Q13356 520 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 FSCN1Q16658 493 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CELF3Q5SZQ8 465 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 IKBIPQ70UQ0 350 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CACUL1Q86Y37 369 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 ENDOVQ8N8Q3 282 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 SLC4A9Q96Q91 983 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 TM6SF2Q9BZW4 377 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 MTIF3Q9H2K0 278 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 DHX33Q9H6R0 707 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CLN6Q9NWW5 311 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 PDHXO00330 501 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 PPP1R11O60927 126 aaPredicted RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 RNASEH1O60930 286 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CKBP12277 381 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 NEK5Q6P3R8 708 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 DOK6Q6PKX4 331 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 HELQQ8TDG4 1101 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 ADARB2Q9NS39 739 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 RPTORQ8N122 1335 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 LRCH4O75427 683 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 SLC22A3O75751 556 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 IFNGR2P38484 337 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 RAB25P57735 213 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 RTL3Q8N8U3 475 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 GNPTGQ9UJJ9 305 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 FAM149AA5PLN7 773 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CATP04040 527 aaKnown RBP16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 PSEN2P49810 448 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 WNT3AP56704 352 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CARTPTQ16568 116 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 LDLRAP1Q5SW96 308 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 DEFB128Q7Z7B8 93 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 GPR180Q86V85 440 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 C12orf56Q8IXR9 622 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CCDC3Q9BQI4 270 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 CRISPLD1Q9H336 500 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 ERGIC3Q9Y282 383 aa16.49■□□□□ 0.23
SH3RF1-201ENST00000284637 STX11O75558 287 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 TTPAP49638 278 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 BEX3Q00994 111 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 GALNT3Q14435 633 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 TPGS1Q6ZTW0 290 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 RD3Q7Z3Z2 195 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 PCSK9Q8NBP7 692 aaKnown RBP16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 C10orf82Q8WW14 230 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 LENG8Q96PV6 779 aaPredicted RBP16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 PANX1Q96RD7 426 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 TRMT13Q9NUP7 481 aaKnown RBP16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 KPNA3O00505 521 aaPredicted RBP16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 MT-ND1P03886 318 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 EPORP19235 508 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 PAX3P23760 479 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 CDKN2BP42772 138 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 ATN1P54259 1190 aaPredicted RBP16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 TRAPPC5Q8IUR0 188 aa16.48■□□□□ 0.23
SH3RF1-201ENST00000284637 GPR156Q8NFN8 814 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms