RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SEPT3Q9UH03 358 aa22.73■■□□□ 1.23
CDX1-201ENST00000231656 GRXCR2A6NFK2 248 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 DCTN3O75935 186 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 C2P06681 752 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 PITRM1Q5JRX3 1037 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 NLRP9Q7RTR0 991 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 BBS5Q8N3I7 341 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 C2CD4AQ8NCU7 369 aaPredicted RBP22.72■■□□□ 1.23
CDX1-201ENST00000231656 FAM167BQ9BTA0 163 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 CINPQ9BW66 212 aaPredicted RBP22.72■■□□□ 1.23
CDX1-201ENST00000231656 MYLK2Q9H1R3 596 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 UBE2ZQ9H832 354 aaPredicted RBP22.72■■□□□ 1.23
CDX1-201ENST00000231656 KCNK13Q9HB14 408 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 HPS4Q9NQG7 708 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 ZNF358Q9NW07 568 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 EPS15L1Q9UBC2 864 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 DCTN4Q9UJW0 460 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 FBXO10Q9UK96 956 aa22.72■■□□□ 1.23
CDX1-201ENST00000231656 MROH6A6NGR9 719 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 ECI2O75521 394 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 DLDP09622 509 aaKnown RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 FGF3P11487 239 aaPredicted RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 SP100P23497 879 aaPredicted RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 SLC1A2P43004 574 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 IRF9Q00978 393 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 CTBP1Q13363 440 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 THOC5Q13769 683 aaKnown RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 CYTH1Q15438 398 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 CCDC153Q494R4 210 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 FUT11Q495W5 492 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 INO80DQ53TQ3 878 aaPredicted RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 YAF2Q8IY57 180 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 RPP25Q9BUL9 199 aaKnown RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 RASSF4Q9H2L5 321 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 ECT2Q9H8V3 914 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 SLC39A10Q9ULF5 831 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 HGSO14964 777 aaPredicted RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 TRIM24O15164 1050 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 TMCC1O94876 653 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 MT-CO1P00395 513 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 EPOP01588 193 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 PABPC1P11940 636 aaKnown RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 NCALDP61601 193 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 SETDB1Q15047 1291 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 SKIV2LQ15477 1246 aaKnown RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 SLC14A2Q15849 920 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 RETSATQ6NUM9 610 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 GPR153Q6NV75 609 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 OR13J1Q8NGT2 312 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 LRRC37BQ96QE4 947 aa22.71■■□□□ 1.23
CDX1-201ENST00000231656 ZNF395Q9H8N7 513 aaPredicted RBP22.71■■□□□ 1.23
CDX1-201ENST00000231656 HLA-DPA1P20036 260 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 POLD2P49005 469 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 CDK18Q07002 472 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 STX3Q13277 289 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 NEPROQ6NW34 567 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 MTSS1LQ765P7 747 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 KIAA0907Q7Z7F0 614 aaPredicted RBP22.7■■□□□ 1.22
CDX1-201ENST00000231656 C12orf40Q86WS4 652 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 ERP27Q96DN0 273 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 COPG2Q9UBF2 871 aa22.7■■□□□ 1.22
CDX1-201ENST00000231656 FGF1P05230 155 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 KCNA4P22459 653 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 GAB4Q2WGN9 574 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 ZNF470Q6ECI4 717 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 ZCCHC23Q6ZST2 131 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.69■■□□□ 1.22
CDX1-201ENST00000231656 IFT43Q96FT9 208 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 GUCD1Q96NT3 240 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 TRIB3Q96RU7 358 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 C20orf27Q9GZN8 174 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 FBXO5Q9UKT4 447 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 ANKRD6Q9Y2G4 727 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 BPTFQ12830 3046 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 COL4A3Q01955 1670 aa22.69■■□□□ 1.22
CDX1-201ENST00000231656 A0A0G2JND7 137 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 LDB2O43679 373 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 SERPINF2P08697 491 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 CISD3P0C7P0 127 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 FOSL2P15408 326 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 CR2P20023 1033 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 CTSOP43234 321 aaPredicted RBP22.68■■□□□ 1.22
CDX1-201ENST00000231656 RGRP47804 291 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 DGKGP49619 791 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 ARFIP2P53365 341 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 SMAD4Q13485 552 aaKnown RBP22.68■■□□□ 1.22
CDX1-201ENST00000231656 DMC1Q14565 340 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 USP10Q14694 798 aaKnown RBP22.68■■□□□ 1.22
CDX1-201ENST00000231656 KIAA0408Q6ZU52 694 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 ADIPOR2Q86V24 386 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 SLC41A1Q8IVJ1 513 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 C10orf107Q8IVU9 208 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 ETFBKMTQ8IXQ9 262 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 NSMCE3Q96MG7 304 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 C1QTNF1Q9BXJ1 281 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 TMEM120AQ9BXJ8 343 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 THAP1Q9NVV9 213 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 FCF1Q9Y324 198 aaKnown RBP22.68■■□□□ 1.22
CDX1-201ENST00000231656 NUMBLQ9Y6R0 609 aa22.68■■□□□ 1.22
CDX1-201ENST00000231656 CXorf51AA0A1B0GTR3 108 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms