RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 PDSS2Q86YH6 399 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 AFAP1L2Q8N4X5 818 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 RTL3Q8N8U3 475 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 KDM1BQ8NB78 822 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 GATA6Q92908 595 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 FCRL5Q96RD9 977 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 MRPL57Q9BQC6 102 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 CENPKQ9BS16 269 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 C1orf21Q9H246 121 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 NOL11Q9H8H0 719 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 MYO9BQ13459 2157 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 HAS3O00219 553 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 KATNA1O75449 491 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 APOA4P06727 396 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 PRKAR2AP13861 404 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 CDKN1CP49918 316 aaPredicted RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SCAPQ12770 1279 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SIRPB2Q5JXA9 342 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 KLHL32Q96NJ5 620 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 CDK15Q96Q40 435 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 C1QTNF1Q9BXJ1 281 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SENP6Q9GZR1 1112 aaPredicted RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 TRAF6Q9Y4K3 522 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 OTOFQ9HC10 1997 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SIP14410 1827 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 MOXD2PA6NHM9 499 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 IQCF5A8MTL0 148 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 H3BMM5 538 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SDHDO14521 159 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 GOT2P00505 430 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 PIK3CGP48736 1102 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 RPL34P49207 117 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 MAPK10P53779 464 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 FOXA1P55317 472 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SGO1Q5FBB7 561 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 ZRANB3Q5FWF4 1079 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 XKR4Q5GH76 650 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 RAB41Q5JT25 222 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 MAP3K21Q5TCX8 1036 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 CLEC14AQ86T13 490 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 LPCAT1Q8NF37 534 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 RP9Q8TA86 221 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 NUDT8Q8WV74 236 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 LPGAT1Q92604 370 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 VPS33AQ96AX1 596 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 SERPINB11Q96P15 392 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 GKN1Q9NS71 199 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 STK39Q9UEW8 545 aa13.72□□□□□ -0.21
PRPF40B-209ENST00000548825 CDH23Q9H251 3354 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 ENPP3O14638 875 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 GLP2RO95838 553 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 HOXD8P13378 290 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 CRABP2P29373 138 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 ARCN1P48444 511 aaKnown RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 MLLT6P55198 1093 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 PLOD1Q02809 727 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 POTEHQ6S545 545 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 PRSS55Q6UWB4 352 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 ANKRD27Q96NW4 1050 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 SIKE1Q9BRV8 207 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 ZYG11BQ9C0D3 744 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 CCDC189A1A4V9 331 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 GIPC1O14908 333 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 DUSP11O75319 330 aaKnown RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 GUCA1CO95843 209 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 SLC2A3P11169 496 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 MYL4P12829 197 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 GGT5P36269 586 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 RBBP7Q16576 425 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 MS4A13Q5J8X5 152 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 SPOUT1Q5T280 376 aaKnown RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 TIGD7Q6NT04 549 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 DENND1CQ8IV53 801 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 JADE3Q92613 823 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 UPF1Q92900 1129 aaKnown RBP eCLIP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 C3orf30Q96M34 536 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 ACOX2Q99424 681 aa13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 FAM124BQ9H5Z6 455 aaPredicted RBP13.71□□□□□ -0.21
PRPF40B-209ENST00000548825 A0A0U1RQF3 1178 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 RNF103-CHMP3A0A140T963 221 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 PDLIM1O00151 329 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 SRP72O76094 671 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 CLIC3O95833 236 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 RPL9P32969 192 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 PCBP1Q15365 356 aaKnown RBP eCLIP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 VARS2Q5ST30 1063 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 LILRA2Q8N149 483 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 SKA2Q8WVK7 121 aaPredicted RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 SEPHS2Q99611 448 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 STN1Q9H668 368 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 ZFYVE28Q9HCC9 887 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 ZBTB26Q9HCK0 441 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 NSMCE4AQ9NXX6 385 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 RRN3Q9NYV6 651 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 PLK2Q9NYY3 685 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 PDP2Q9P2J9 529 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 NUP214P35658 2090 aaPredicted RBP13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 CCDC162PA2VCL2 907 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 TRPC5OSA6NMA1 111 aa13.7□□□□□ -0.22
PRPF40B-209ENST00000548825 RNASEH2AO75792 299 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms