RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 KYNUQ16719 465 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 SOWAHAQ2M3V2 549 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 SMTNL2Q2TAL5 461 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 PCGF3Q3KNV8 242 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 C6orf141Q5SZD1 244 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 PAPD7Q5XG87 772 aaKnown RBP7.59□□□□□ -1.19
NUP54-215ENST00000514313 ACSM2BQ68CK6 577 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 MIS18BP1Q6P0N0 1132 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 PCSK4Q6UW60 755 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 ZNF793Q6ZN11 406 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 UBE2Q1Q7Z7E8 422 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 ZBTB2Q8N680 514 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 KDM1BQ8NB78 822 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 FAM98AQ8NCA5 519 aaKnown RBP7.59□□□□□ -1.19
NUP54-215ENST00000514313 SEMA6DQ8NFY4 1073 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 CCDC34Q96HJ3 373 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 FIZ1Q96SL8 496 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 B3GNT4Q9C0J1 378 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 THSD1Q9NS62 852 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 TAB2Q9NYJ8 693 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 MYRFQ9Y2G1 1151 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 CEPT1Q9Y6K0 416 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 SLC4A4Q9Y6R1 1079 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 MAU2Q9Y6X3 613 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 PAPSS1O43252 624 aaPredicted RBP7.58□□□□□ -1.2
NUP54-215ENST00000514313 PROP1O75360 226 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 TFPIP10646 304 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 RPS13P62277 151 aaKnown RBP7.58□□□□□ -1.2
NUP54-215ENST00000514313 SORDQ00796 357 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 AIMP1Q12904 312 aaKnown RBP7.58□□□□□ -1.2
NUP54-215ENST00000514313 KLF10Q13118 480 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 NAB2Q15742 525 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 USP41Q3LFD5 358 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 C6orf10Q5SRN2 563 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 ERMARDQ5T6L9 678 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 ADALQ6DHV7 355 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 TMEM71Q6P5X7 295 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 AVL9Q8NBF6 648 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 PPP1R13BQ96KQ4 1090 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 PAFAH2Q99487 392 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 FAM118BQ9BPY3 351 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 SLC28A3Q9HAS3 691 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 SLC35C2Q9NQQ7 365 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 ANKRD10Q9NXR5 420 aa7.58□□□□□ -1.2
NUP54-215ENST00000514313 KRTAP4-8A0A0G2JLE6 195 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 MANSC4A6NHS7 340 aaPredicted RBP7.57□□□□□ -1.2
NUP54-215ENST00000514313 LMAN1P49257 510 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 LPIN1Q14693 890 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 ARHGEF6Q15052 776 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 ADIPOQQ15848 244 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 SOWAHCQ53LP3 525 aaPredicted RBP7.57□□□□□ -1.2
NUP54-215ENST00000514313 C1orf141Q5JVX7 400 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 GPSM1Q86YR5 675 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 FAM217AQ8IXS0 508 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 OR14L1PQ8NHC6 308 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 CEP76Q8TAP6 659 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 HASPINQ8TF76 798 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 SLITRK1Q96PX8 696 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 WDR83Q9BRX9 315 aaKnown RBP7.57□□□□□ -1.2
NUP54-215ENST00000514313 TUBB6Q9BUF5 446 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 NPFFR1Q9GZQ6 430 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 HRH4Q9H3N8 390 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 RABEP2Q9H5N1 569 aa7.57□□□□□ -1.2
NUP54-215ENST00000514313 A0A0G2JK05 382 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 A6NNC1 897 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 PRPF4O43172 522 aaKnown RBP eCLIP7.56□□□□□ -1.2
NUP54-215ENST00000514313 MITFO75030 526 aaPredicted RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 FZD7O75084 574 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 HSPA4LO95757 839 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 LATS1O95835 1130 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 MMP3P08254 477 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 STAT2P52630 851 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 GHRHRQ02643 423 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 COL10A1Q03692 680 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 FAM27E3Q08E93 113 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 NAE1Q13564 534 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 PLCB4Q15147 1175 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 CEP78Q5JTW2 689 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 PIK3CD-AS1Q5SR53 167 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 LRIF1Q5T3J3 769 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 NCAPH2Q6IBW4 605 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 ZNF788Q6ZQV5 615 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 RNF168Q8IYW5 571 aaPredicted RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 BOLLQ8N9W6 283 aaKnown RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 POMGNT2Q8NAT1 580 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 POGLUT1Q8NBL1 392 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 RRNAD1Q96FB5 475 aaKnown RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 PGAP3Q96FM1 320 aaPredicted RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 SLC41A2Q96JW4 573 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 FAM110AQ9BQ89 295 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 R3HDM2Q9Y2K5 976 aaKnown RBP7.56□□□□□ -1.2
NUP54-215ENST00000514313 CMAHPQ9Y471 501 aa7.56□□□□□ -1.2
NUP54-215ENST00000514313 hCG_1809904A0A1W2PP81 198 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 A0A1W2PPE2 198 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 A0A1W2PR64 198 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 A0A1W2PR77 199 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 ADAMDEC1O15204 470 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 RGS11O94810 467 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 MMP2P08253 660 aa7.55□□□□□ -1.2
NUP54-215ENST00000514313 CTSAP10619 480 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms