RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CRLF3Q8IUI8 442 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MFN1Q8IWA4 741 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 DCAF4L2Q8NA75 395 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 VN1R2Q8NFZ6 395 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 ADAMTS19Q8TE59 1207 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 C10orf82Q8WW14 230 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 ZNF707Q96C28 371 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 C2orf49Q9BVC5 232 aaPredicted RBP16.95■□□□□ 0.3
LDLR-206ENST00000557958 ADGRE3Q9BY15 652 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MFSD1Q9H3U5 465 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 NOD2Q9HC29 1040 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 THAP1Q9NVV9 213 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 CFAP97Q9P2B7 532 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 EMCNQ9ULC0 261 aa16.95■□□□□ 0.3
LDLR-206ENST00000557958 MIA3Q5JRA6 1907 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 FAM95CA0A1B0GW59 222 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 TTC24A2A3L6 582 aaPredicted RBP16.94■□□□□ 0.3
LDLR-206ENST00000557958 VGLL3A8MV65 326 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 STMN1P16949 149 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 GLDCP23378 1020 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 SCTRP47872 440 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 CLCN5P51795 746 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 IRX4P78413 519 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 POU4F1Q01851 419 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 CTBP1Q13363 440 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 TCEAL5Q5H9L2 206 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 CLEC14AQ86T13 490 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 METTL3Q86U44 580 aaKnown RBP16.94■□□□□ 0.3
LDLR-206ENST00000557958 DENND6AQ8IWF6 608 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 TDRD5Q8NAT2 981 aaKnown RBP16.94■□□□□ 0.3
LDLR-206ENST00000557958 OR6P1Q8NGX9 317 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 RDH11Q8TC12 318 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 BLOC1S5Q8TDH9 187 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 DDI1Q8WTU0 396 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 TSPAN17Q96FV3 270 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 RMDN2Q96LZ7 410 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 FEM1AQ9BSK4 669 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 COPG2Q9UBF2 871 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 SLC12A4Q9UP95 1085 aa16.94■□□□□ 0.3
LDLR-206ENST00000557958 TNRC18O15417 2968 aaPredicted RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 GFRA2O00451 464 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 LINC01565O15544 149 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 H2AFYO75367 372 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 TMCC1O94876 653 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 TOP3BO95985 862 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 CYBBP04839 570 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 SERPINE1P05121 402 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 CPA3P15088 417 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 CR2P20023 1033 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 RAB10P61026 200 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 MPP1Q00013 466 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 OVGP1Q12889 678 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 RETSATQ6NUM9 610 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 C16orf46Q6P387 395 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 LEMD2Q8NC56 503 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 OR13J1Q8NGT2 312 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 STYXQ8WUJ0 223 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 USP13Q92995 863 aaPredicted RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 RMDN1Q96DB5 314 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 THOC1Q96FV9 657 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 TRIB3Q96RU7 358 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 SIKE1Q9BRV8 207 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 CAB39LQ9H9S4 337 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 TMEM216Q9P0N5 145 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 ACOT9Q9Y305 439 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 MRPS23Q9Y3D9 190 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 A0A087X1B8 175 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 LDB2O43679 373 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 HOXB8P17481 243 aaPredicted RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 ABCG1P45844 678 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 ARFIP2P53365 341 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 OCRLQ01968 901 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 ACVR1Q04771 509 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 GALNT3Q14435 633 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 IHHQ14623 411 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 PCLAFQ15004 111 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 CYTH1Q15438 398 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 TSNAXIP1Q2TAA8 658 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 SPDYAQ5MJ70 313 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 MRNIPQ6NTE8 343 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 PPP4R1Q8TF05 950 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 BHMTQ93088 406 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 ELMO2Q96JJ3 720 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 TDRD1Q9BXT4 1180 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 NSUN3Q9H649 340 aaKnown RBP16.93■□□□□ 0.3
LDLR-206ENST00000557958 NMRAL1Q9HBL8 299 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 GGT7Q9UJ14 662 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 ARHGAP26Q9UNA1 814 aa16.93■□□□□ 0.3
LDLR-206ENST00000557958 MTCL1Q9Y4B5 1905 aaKnown RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 A0A0G2JND7 137 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 SNNO75324 88 aaPredicted RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 MOSPD3O75425 235 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 RPP40O75818 363 aaKnown RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 UBOX5O94941 541 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 SAT1P21673 171 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 GABRB3P28472 473 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 LEPRP48357 1165 aaKnown RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 ARF5P84085 180 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 HYAL1Q12794 435 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 MBLAC2Q68D91 279 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms