RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 RAPGEF5Q92565 580 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 MS4A3Q96HJ5 214 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 ZNF641Q96N77 438 aaPredicted RBP8.35□□□□□ -1.07
HDAC6-221ENST00000477561 KLF6Q99612 283 aaPredicted RBP8.35□□□□□ -1.07
HDAC6-221ENST00000477561 CDC6Q99741 560 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 NAPGQ99747 312 aaPredicted RBP8.35□□□□□ -1.07
HDAC6-221ENST00000477561 C1QTNF2Q9BXJ5 285 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 ATP13A3Q9H7F0 1226 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 ERVMER34-1Q9H9K5 563 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 PCDH12Q9NPG4 1184 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 DKK3Q9UBP4 350 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 SEPT3Q9UH03 358 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 TFR2Q9UP52 801 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 WASF3Q9UPY6 502 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 HYOU1Q9Y4L1 999 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 HS3ST3A1Q9Y663 406 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 SPEGQ15772 3267 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 KNL1Q8NG31 2342 aa8.35□□□□□ -1.07
HDAC6-221ENST00000477561 A6NNZ2 444 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 FPGTO14772 594 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TM7SF2O76062 418 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 LDOC1O95751 146 aaPredicted RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 KRT7P08729 469 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 KDELR1P24390 212 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 SERPINA4P29622 427 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 MAN1A1P33908 653 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 SERPINB6P35237 376 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 RXRGP48443 463 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 CSNK1DP48730 415 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 RENBPP51606 427 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 SHC2P98077 582 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 ITKQ08881 620 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 NSUN2Q08J23 767 aaKnown RBP eCLIP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 DNAJC3Q13217 504 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PDE1CQ14123 709 aaPredicted RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 GRM3Q14832 879 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PDK2Q15119 407 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TMEM52BQ4KMG9 183 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TPRG1LQ5T0D9 272 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 MARC1Q5VT66 337 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 NCBP2-AS2Q69YL0 99 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 MARCH9Q86YJ5 346 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 SLC25A45Q8N413 288 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 OXR1Q8N573 874 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PQLC3Q8N755 202 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PDCD6IPQ8WUM4 868 aaKnown RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 NSMCE1Q8WV22 266 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 CENPTQ96BT3 561 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 CNDP2Q96KP4 475 aaKnown RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 ZNF599Q96NL3 588 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 LENG8Q96PV6 779 aaPredicted RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PSKH2Q96QS6 385 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TUBGCP5Q96RT8 1024 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 WDR24Q96S15 920 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 NOD2Q9HC29 1040 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 NT5MQ9NPB1 228 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 SCUBE2Q9NQ36 999 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 MBNL1Q9NR56 388 aaKnown RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 UCKL1Q9NWZ5 548 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 DNAJC28Q9NX36 388 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TOR4AQ9NXH8 423 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 RCOR3Q9P2K3 495 aaPredicted RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 FTSJ1Q9UET6 329 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 LCMT1Q9UIC8 334 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 APOBEC2Q9Y235 224 aaKnown RBP8.34□□□□□ -1.07
HDAC6-221ENST00000477561 JRKLQ9Y4A0 524 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 PCDHGC4Q9Y5F7 938 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 DUSP10Q9Y6W6 482 aa8.34□□□□□ -1.07
HDAC6-221ENST00000477561 TSPAN11A1L157 253 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 LRRD1A4D1F6 860 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 C1QTNF9BB2RNN3 333 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 TRAFD1O14545 582 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 ENC1O14682 589 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 FFAR2O15552 330 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 TNFSF14O43557 240 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 LZTS3O60299 673 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 URI1O94763 535 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 MTA2O94776 668 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 TRIM16O95361 564 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 C1QTNF9P0C862 333 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 C6P13671 934 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 DGKAP23743 735 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 IGFALSP35858 605 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 GARSP41250 739 aaKnown RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 MMP13P45452 471 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 RABIFP47224 123 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 LIG3P49916 1009 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 HADHBP55084 474 aaKnown RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 AP1S1P61966 158 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 GBE1Q04446 702 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 ELP6Q0PNE2 266 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 SLC10A2Q12908 348 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 PDAP1Q13442 181 aaKnown RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 FZD2Q14332 565 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 PAFAH1B3Q15102 231 aaKnown RBP8.33□□□□□ -1.08
HDAC6-221ENST00000477561 PTPRRQ15256 657 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 LLGL1Q15334 1064 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 INAVAQ3KP66 663 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 ERAP2Q6P179 960 aa8.33□□□□□ -1.08
HDAC6-221ENST00000477561 BRAT1Q6PJG6 821 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms