RNA–Protein interactions for RNA: YOL112W

MSB4, Transcript of GTPase-activating protein of the Ras superfamily, yeast

Gene MSB4, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB4	YOL112W	VPS30	Q02948	557 aa		11.07	□□□□□ -0.64
MSB4	YOL112W	MYO5	Q04439	1219 aa	Known RBP	11.07	□□□□□ -0.64
MSB4	YOL112W	SRF1	Q12516	437 aa		11.07	□□□□□ -0.64
MSB4	YOL112W	VID28	P40547	921 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	ECM23	Q02710	187 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	RPL8B	P29453	256 aa	Known RBP	11.06	□□□□□ -0.64
MSB4	YOL112W	MCD4	P36051	919 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	VAB2	P40003	282 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	SPO22	P40511	975 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	UBX5	Q06682	500 aa		11.06	□□□□□ -0.64
MSB4	YOL112W	NUC1	P08466	329 aa		11.05	□□□□□ -0.64
MSB4	YOL112W	ERG7	P38604	731 aa		11.05	□□□□□ -0.64
MSB4	YOL112W	SPR3	P41901	512 aa		11.05	□□□□□ -0.64
MSB4	YOL112W	CFT2	Q12102	859 aa	Predicted RBP	11.05	□□□□□ -0.64
MSB4	YOL112W	SRP54	P20424	541 aa	Known RBP	11.04	□□□□□ -0.64
MSB4	YOL112W	SUE1	Q06524	206 aa		11.04	□□□□□ -0.64
MSB4	YOL112W	YOR111W	Q99210	232 aa		11.04	□□□□□ -0.64
MSB4	YOL112W	PER1	P25625	357 aa		11.03	□□□□□ -0.64
MSB4	YOL112W	SOL4	P53315	255 aa		11.03	□□□□□ -0.64
MSB4	YOL112W	TSR3	Q12094	313 aa	Known RBP	11.03	□□□□□ -0.64
MSB4	YOL112W	FBP26	P32604	452 aa		11.02	□□□□□ -0.65
MSB4	YOL112W	AKR1	P39010	764 aa		11.02	□□□□□ -0.65
MSB4	YOL112W	SGD1	Q06132	899 aa		11.02	□□□□□ -0.65
MSB4	YOL112W	ECM29	P38737	1868 aa		11.02	□□□□□ -0.65
MSB4	YOL112W	CDC60	P26637	1090 aa	Known RBP	11.01	□□□□□ -0.65
MSB4	YOL112W	PHO88	P38264	188 aa	Predicted RBP	11.01	□□□□□ -0.65
MSB4	YOL112W	VPS45	P38932	577 aa		11.01	□□□□□ -0.65
MSB4	YOL112W	PES4	P39684	611 aa		11.01	□□□□□ -0.65
MSB4	YOL112W	NCS6	P53088	359 aa		11.01	□□□□□ -0.65
MSB4	YOL112W	YLR225C	Q05948	407 aa	Known RBP	11.01	□□□□□ -0.65
MSB4	YOL112W	RAD18	P10862	487 aa		11	□□□□□ -0.65
MSB4	YOL112W	EPL1	P43572	832 aa		11	□□□□□ -0.65
MSB4	YOL112W	UTP4	Q06679	776 aa	Known RBP	11	□□□□□ -0.65
MSB4	YOL112W	RNR2	P09938	399 aa	Known RBP	11	□□□□□ -0.65
MSB4	YOL112W	SRS2	P12954	1174 aa		11	□□□□□ -0.65
MSB4	YOL112W	RNR3	P21672	869 aa	Known RBP	11	□□□□□ -0.65
MSB4	YOL112W	ALG2	P43636	503 aa		11	□□□□□ -0.65
MSB4	YOL112W	ARP5	P53946	755 aa		11	□□□□□ -0.65
MSB4	YOL112W	CLF1	Q12309	687 aa	Predicted RBP	11	□□□□□ -0.65
MSB4	YOL112W	SAM1	P10659	382 aa	Known RBP	10.99	□□□□□ -0.65
MSB4	YOL112W	NDT80	P38830	627 aa		10.99	□□□□□ -0.65
MSB4	YOL112W	MDM1	Q01846	1127 aa		10.99	□□□□□ -0.65
MSB4	YOL112W	DSE3	Q08729	430 aa		10.99	□□□□□ -0.65
MSB4	YOL112W	RLF2	Q12495	606 aa		10.99	□□□□□ -0.65
MSB4	YOL112W	MATALPHA2	P0CY08	210 aa		10.98	□□□□□ -0.65
MSB4	YOL112W	HMLALPHA2	P0CY09	210 aa		10.98	□□□□□ -0.65
MSB4	YOL112W	VMA2	P16140	517 aa	Known RBP	10.98	□□□□□ -0.65
MSB4	YOL112W	SIS2	P36024	562 aa		10.98	□□□□□ -0.65
MSB4	YOL112W	MAL31	P38156	614 aa		10.98	□□□□□ -0.65
MSB4	YOL112W	TMA64	Q04600	565 aa	Known RBP	10.98	□□□□□ -0.65
MSB4	YOL112W	EUG1	P32474	517 aa		10.97	□□□□□ -0.65
MSB4	YOL112W	YKE2	P52553	114 aa		10.97	□□□□□ -0.65
MSB4	YOL112W	ALD6	P54115	500 aa	Known RBP	10.97	□□□□□ -0.65
MSB4	YOL112W	UTR4	P32626	227 aa		10.96	□□□□□ -0.65
MSB4	YOL112W	TGL1	P34163	548 aa		10.96	□□□□□ -0.65
MSB4	YOL112W	TY3A-G	Q12173	290 aa		10.96	□□□□□ -0.65
MSB4	YOL112W	TY3A-I	Q99219	290 aa		10.96	□□□□□ -0.65
MSB4	YOL112W	HCA4	P20448	770 aa	Known RBP	10.95	□□□□□ -0.66
MSB4	YOL112W	DIT2	P21595	489 aa		10.95	□□□□□ -0.66
MSB4	YOL112W	PKC1	P24583	1151 aa		10.95	□□□□□ -0.66
MSB4	YOL112W	SHP1	P34223	423 aa		10.95	□□□□□ -0.66
MSB4	YOL112W	ATG1	P53104	897 aa		10.95	□□□□□ -0.66
MSB4	YOL112W	ISW2	Q08773	1120 aa		10.95	□□□□□ -0.66
MSB4	YOL112W	CIT1	P00890	479 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	MET6	P05694	767 aa	Known RBP	10.94	□□□□□ -0.66
MSB4	YOL112W	STI1	P15705	589 aa	Known RBP RIP-Chip data	10.94	□□□□□ -0.66	not detected
MSB4	YOL112W	SWI4	P25302	1093 aa	Known RBP	10.94	□□□□□ -0.66
MSB4	YOL112W	GPB2	P39717	880 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	YIR014W	P40570	242 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	ENT3	P47160	408 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	CTF18	P49956	741 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	DUS4	Q06063	367 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	CSC1	Q06538	782 aa		10.94	□□□□□ -0.66
MSB4	YOL112W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	10.93	□□□□□ -0.66	not detected
MSB4	YOL112W	TOM71	P38825	639 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	ASE1	P50275	885 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	LSB1	P53281	241 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	YDR341C	Q05506	607 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	DUS3	Q06053	668 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	YLR407W	Q06070	228 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	SPH1	Q06160	661 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	FKS1	P38631	1876 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	BMH2	P34730	273 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	RXT2	P38255	430 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	RPN10	P38886	268 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	PCI8	P40512	444 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	FMS1	P50264	508 aa		10.93	□□□□□ -0.66
MSB4	YOL112W	UBP10	P53874	792 aa	Predicted RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	VIP1	Q06685	1146 aa	Known RBP	10.93	□□□□□ -0.66
MSB4	YOL112W	VPS20	Q04272	221 aa		10.92	□□□□□ -0.66
MSB4	YOL112W	YKR018C	P36114	725 aa		10.91	□□□□□ -0.66
MSB4	YOL112W	CTR1	P49573	406 aa		10.91	□□□□□ -0.66
MSB4	YOL112W	YGR125W	P53273	1036 aa		10.91	□□□□□ -0.66
MSB4	YOL112W	RKM4	Q12504	494 aa		10.91	□□□□□ -0.66
MSB4	YOL112W	RPL8A	P17076	256 aa	Known RBP	10.9	□□□□□ -0.66
MSB4	YOL112W	SRP40	P32583	406 aa	Predicted RBP	10.9	□□□□□ -0.66
MSB4	YOL112W	OPY1	P38271	328 aa		10.9	□□□□□ -0.66
MSB4	YOL112W	YHL017W	P38745	532 aa		10.9	□□□□□ -0.66
MSB4	YOL112W	NPA3	P47122	385 aa		10.9	□□□□□ -0.66
MSB4	YOL112W	BUL2	Q03758	920 aa	Known RBP	10.9	□□□□□ -0.66

Retrieved 100 of 5,963 RNA–protein pairs in 35.2 ms