RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 TRIM35Q9UPQ4 493 aa14.87□□□□□ -0.03
CLN6-217ENST00000636964 TOPAZ1Q8N9V7 1692 aa14.87□□□□□ -0.03
CLN6-217ENST00000636964 FCHSD2O94868 740 aa14.87□□□□□ -0.03
CLN6-217ENST00000636964 CCDC27Q2M243 656 aa14.87□□□□□ -0.03
CLN6-217ENST00000636964 RSPH6AQ9H0K4 717 aa14.87□□□□□ -0.03
CLN6-217ENST00000636964 ZNF142P52746 1687 aaPredicted RBP14.87□□□□□ -0.03
CLN6-217ENST00000636964 TSR2Q969E8 191 aaKnown RBP14.86□□□□□ -0.03
CLN6-217ENST00000636964 AATKQ6ZMQ8 1374 aa14.86□□□□□ -0.03
CLN6-217ENST00000636964 LAS1LQ9Y4W2 734 aaKnown RBP14.86□□□□□ -0.03
CLN6-217ENST00000636964 NPHP4O75161 1426 aaPredicted RBP14.85□□□□□ -0.03
CLN6-217ENST00000636964 BCL2L13Q9BXK5 485 aa14.85□□□□□ -0.03
CLN6-217ENST00000636964 BRPF3Q9ULD4 1205 aa14.84□□□□□ -0.03
CLN6-217ENST00000636964 NEFMP07197 916 aa14.84□□□□□ -0.03
CLN6-217ENST00000636964 HSP90AB2PQ58FF8 381 aa14.84□□□□□ -0.03
CLN6-217ENST00000636964 PNNQ9H307 717 aaKnown RBP14.84□□□□□ -0.03
CLN6-217ENST00000636964 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.84□□□□□ -0.03
CLN6-217ENST00000636964 CHD2O14647 1828 aaKnown RBP14.83□□□□□ -0.03
CLN6-217ENST00000636964 NLRP6P59044 892 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 CHMP4AQ9BY43 222 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 HAP1P54257 671 aaPredicted RBP14.83□□□□□ -0.04
CLN6-217ENST00000636964 PAXIP1Q6ZW49 1069 aaPredicted RBP14.83□□□□□ -0.04
CLN6-217ENST00000636964 FRAT1Q92837 279 aaPredicted RBP14.83□□□□□ -0.04
CLN6-217ENST00000636964 NRKQ7Z2Y5 1582 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 OVOS2A0A0J9YW53 1432 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 OVOS2Q6IE36 1432 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 SSH2Q76I76 1423 aa14.83□□□□□ -0.04
CLN6-217ENST00000636964 ESCO1Q5FWF5 840 aa14.82□□□□□ -0.04
CLN6-217ENST00000636964 LRRC7Q96NW7 1537 aa14.82□□□□□ -0.04
CLN6-217ENST00000636964 EIF4A2Q14240 407 aaKnown RBP14.82□□□□□ -0.04
CLN6-217ENST00000636964 THUMPD2Q9BTF0 503 aaKnown RBP14.82□□□□□ -0.04
CLN6-217ENST00000636964 MYH16Q9H6N6 1097 aa14.82□□□□□ -0.04
CLN6-217ENST00000636964 CDK12Q9NYV4 1490 aaPredicted RBP14.82□□□□□ -0.04
CLN6-217ENST00000636964 AEBP1Q8IUX7 1158 aa14.82□□□□□ -0.04
CLN6-217ENST00000636964 PHF8Q9UPP1 1060 aa14.81□□□□□ -0.04
CLN6-217ENST00000636964 TTC21AQ8NDW8 1320 aa14.81□□□□□ -0.04
CLN6-217ENST00000636964 CANXP27824 592 aaKnown RBP14.81□□□□□ -0.04
CLN6-217ENST00000636964 ABTB2Q8N961 1025 aa14.81□□□□□ -0.04
CLN6-217ENST00000636964 HSPA2P54652 639 aa14.81□□□□□ -0.04
CLN6-217ENST00000636964 RARSP54136 660 aaKnown RBP14.8□□□□□ -0.04
CLN6-217ENST00000636964 MAP3K19Q56UN5 1328 aa14.8□□□□□ -0.04
CLN6-217ENST00000636964 EXOSC9Q06265 439 aaKnown RBP14.8□□□□□ -0.04
CLN6-217ENST00000636964 SULT6B1Q6IMI4 303 aa14.8□□□□□ -0.04
CLN6-217ENST00000636964 PROSER2Q86WR7 435 aaPredicted RBP14.8□□□□□ -0.04
CLN6-217ENST00000636964 NALCNQ8IZF0 1738 aa14.79□□□□□ -0.04
CLN6-217ENST00000636964 ANKARQ7Z5J8 1434 aa14.79□□□□□ -0.04
CLN6-217ENST00000636964 NPM2Q86SE8 214 aaKnown RBP14.79□□□□□ -0.04
CLN6-217ENST00000636964 XPCQ01831 940 aaPredicted RBP14.79□□□□□ -0.04
CLN6-217ENST00000636964 NFE2L2Q16236 605 aa14.79□□□□□ -0.04
CLN6-217ENST00000636964 AMPHP49418 695 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 PANK1Q8TE04 598 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 ORAI2Q96SN7 254 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 FMN2Q9NZ56 1722 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 TNNQ9UQP3 1299 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 USP31Q70CQ4 1352 aa14.78□□□□□ -0.04
CLN6-217ENST00000636964 FAM83GA6ND36 823 aa14.77□□□□□ -0.04
CLN6-217ENST00000636964 PSME1Q06323 249 aa14.77□□□□□ -0.04
CLN6-217ENST00000636964 FOXO3O43524 673 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 DCTN1Q14203 1278 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 SKAP1Q86WV1 359 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 ADGRL3Q9HAR2 1447 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 CLUAP1Q96AJ1 413 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 COG6Q9Y2V7 657 aa14.76□□□□□ -0.05
CLN6-217ENST00000636964 PEAK1Q9H792 1746 aa14.75□□□□□ -0.05
CLN6-217ENST00000636964 ZBTB7CA1YPR0 619 aa14.74□□□□□ -0.05
CLN6-217ENST00000636964 LTV1Q96GA3 475 aaPredicted RBP14.74□□□□□ -0.05
CLN6-217ENST00000636964 PIK3C2AO00443 1686 aa14.74□□□□□ -0.05
CLN6-217ENST00000636964 USP35Q9P2H5 1018 aa14.74□□□□□ -0.05
CLN6-217ENST00000636964 LMOD2Q6P5Q4 547 aa14.74□□□□□ -0.05
CLN6-217ENST00000636964 IL16Q14005 1332 aa14.73□□□□□ -0.05
CLN6-217ENST00000636964 ELL2O00472 640 aaPredicted RBP14.72□□□□□ -0.05
CLN6-217ENST00000636964 RLBP1P12271 317 aa14.72□□□□□ -0.05
CLN6-217ENST00000636964 SMC4Q9NTJ3 1288 aa14.72□□□□□ -0.05
CLN6-217ENST00000636964 SBNO1A3KN83 1393 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 FLT4P35916 1363 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 SSH1Q8WYL5 1049 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 PDE4AP27815 886 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 PDE3AQ14432 1141 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 EYA1Q99502 592 aa14.71□□□□□ -0.05
CLN6-217ENST00000636964 BRD2P25440 801 aaKnown RBP14.7□□□□□ -0.06
CLN6-217ENST00000636964 HOXC9P31274 260 aa14.7□□□□□ -0.06
CLN6-217ENST00000636964 BACH2Q9BYV9 841 aa14.7□□□□□ -0.06
CLN6-217ENST00000636964 MCM10Q7L590 875 aa14.69□□□□□ -0.06
CLN6-217ENST00000636964 C19orf44Q9H6X5 657 aa14.69□□□□□ -0.06
CLN6-217ENST00000636964 KDM4FA0A1W2PPD8 638 aa14.69□□□□□ -0.06
CLN6-217ENST00000636964 TCERG1O14776 1098 aaKnown RBP14.69□□□□□ -0.06
CLN6-217ENST00000636964 TSPYL6Q8N831 410 aa14.69□□□□□ -0.06
CLN6-217ENST00000636964 MBIPQ9NS73 344 aa14.69□□□□□ -0.06
CLN6-217ENST00000636964 DDX17Q92841 729 aaKnown RBP14.68□□□□□ -0.06
CLN6-217ENST00000636964 DLG5Q8TDM6 1919 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 GNAI1P63096 354 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 LMOD3Q0VAK6 560 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 USHBP1Q8N6Y0 703 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 TMEM94Q12767 1356 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 GSE1Q14687 1217 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 ZKSCAN2Q63HK3 967 aa14.67□□□□□ -0.06
CLN6-217ENST00000636964 NOB1Q9ULX3 412 aaKnown RBP14.67□□□□□ -0.06
CLN6-217ENST00000636964 CT47B1P0C2W7 299 aaPredicted RBP14.66□□□□□ -0.06
CLN6-217ENST00000636964 CALD1Q05682 793 aaKnown RBP14.66□□□□□ -0.06
CLN6-217ENST00000636964 MTHFSDQ2M296 383 aaKnown RBP14.66□□□□□ -0.06
CLN6-217ENST00000636964 ATF3P18847 181 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms