RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 BCL11BQ9C0K0 894 aaPredicted RBP21.27■■□□□ 1
PNKP-218ENST00000625299 AKAP12Q02952 1782 aa21.27■■□□□ 1
PNKP-218ENST00000625299 CASZ1Q86V15 1759 aa21.27■■□□□ 1
PNKP-218ENST00000625299 PIK3C2AO00443 1686 aa21.26■□□□□ 0.99
PNKP-218ENST00000625299 PLSCR1O15162 318 aa21.26■□□□□ 0.99
PNKP-218ENST00000625299 COL18A1P39060 1754 aa21.25■□□□□ 0.99
PNKP-218ENST00000625299 SOX12O15370 315 aa21.24■□□□□ 0.99
PNKP-218ENST00000625299 ZBTB7AO95365 584 aa21.24■□□□□ 0.99
PNKP-218ENST00000625299 PDGFDQ9GZP0 370 aaPredicted RBP21.24■□□□□ 0.99
PNKP-218ENST00000625299 MARCH10Q8NA82 808 aaPredicted RBP21.23■□□□□ 0.99
PNKP-218ENST00000625299 AXIN2Q9Y2T1 843 aa21.23■□□□□ 0.99
PNKP-218ENST00000625299 WDR17Q8IZU2 1322 aa21.23■□□□□ 0.99
PNKP-218ENST00000625299 RGPD5Q99666 1765 aa21.23■□□□□ 0.99
PNKP-218ENST00000625299 CPSF1Q10570 1443 aaKnown RBP21.22■□□□□ 0.99
PNKP-218ENST00000625299 MYOM1P52179 1685 aa21.22■□□□□ 0.99
PNKP-218ENST00000625299 CSB-PGBD3P0DP91 1061 aa21.22■□□□□ 0.99
PNKP-218ENST00000625299 ATF5Q9Y2D1 282 aaPredicted RBP21.2■□□□□ 0.98
PNKP-218ENST00000625299 PROM2Q8N271 834 aa21.19■□□□□ 0.98
PNKP-218ENST00000625299 CDCA7Q9BWT1 371 aaPredicted RBP21.19■□□□□ 0.98
PNKP-218ENST00000625299 STK32BQ9NY57 414 aa21.19■□□□□ 0.98
PNKP-218ENST00000625299 EVC2Q86UK5 1308 aa21.17■□□□□ 0.98
PNKP-218ENST00000625299 TXNRD1Q16881 649 aa21.16■□□□□ 0.98
PNKP-218ENST00000625299 ARHGEF25Q86VW2 580 aa21.16■□□□□ 0.98
PNKP-218ENST00000625299 KCNH5Q8NCM2 988 aa21.16■□□□□ 0.98
PNKP-218ENST00000625299 TRPM1Q7Z4N2 1603 aa21.15■□□□□ 0.98
PNKP-218ENST00000625299 BCL9O00512 1426 aa21.15■□□□□ 0.98
PNKP-218ENST00000625299 TTC21BQ7Z4L5 1316 aa21.15■□□□□ 0.98
PNKP-218ENST00000625299 PTGER2P43116 358 aa21.15■□□□□ 0.98
PNKP-218ENST00000625299 CARD10Q9BWT7 1032 aa21.15■□□□□ 0.98
PNKP-218ENST00000625299 EXOC5O00471 708 aa21.14■□□□□ 0.97
PNKP-218ENST00000625299 UTRNP46939 3433 aa21.13■□□□□ 0.97
PNKP-218ENST00000625299 SLC15A2Q16348 729 aa21.13■□□□□ 0.97
PNKP-218ENST00000625299 FHDC1Q9C0D6 1143 aaPredicted RBP21.12■□□□□ 0.97
PNKP-218ENST00000625299 TNS2Q63HR2 1409 aa21.11■□□□□ 0.97
PNKP-218ENST00000625299 CCDC7Q96M83 1385 aa21.1■□□□□ 0.97
PNKP-218ENST00000625299 NFAT5O94916 1531 aa21.1■□□□□ 0.97
PNKP-218ENST00000625299 ACSBG1Q96GR2 724 aa21.1■□□□□ 0.97
PNKP-218ENST00000625299 ZNF692Q9BU19 519 aaPredicted RBP21.1■□□□□ 0.97
PNKP-218ENST00000625299 TTC21AQ8NDW8 1320 aa21.09■□□□□ 0.97
PNKP-218ENST00000625299 NHSQ6T4R5 1651 aa21.09■□□□□ 0.97
PNKP-218ENST00000625299 ZNF784Q8NCA9 323 aaPredicted RBP21.09■□□□□ 0.97
PNKP-218ENST00000625299 SYT17Q9BSW7 474 aa21.09■□□□□ 0.97
PNKP-218ENST00000625299 MTFR1LQ9H019 292 aa21.09■□□□□ 0.97
PNKP-218ENST00000625299 L3MBTL2Q969R5 705 aa21.08■□□□□ 0.97
PNKP-218ENST00000625299 KTN1Q86UP2 1357 aaKnown RBP21.08■□□□□ 0.96
PNKP-218ENST00000625299 KAT6BQ8WYB5 2073 aa21.06■□□□□ 0.96
PNKP-218ENST00000625299 ROCK2O75116 1388 aaKnown RBP21.06■□□□□ 0.96
PNKP-218ENST00000625299 ABCC6O95255 1503 aa21.05■□□□□ 0.96
PNKP-218ENST00000625299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.05■□□□□ 0.96
PNKP-218ENST00000625299 NLRP2Q9NX02 1062 aa21.05■□□□□ 0.96
PNKP-218ENST00000625299 CHD4Q14839 1912 aa21.05■□□□□ 0.96
PNKP-218ENST00000625299 MON2Q7Z3U7 1717 aa21.04■□□□□ 0.96
PNKP-218ENST00000625299 BTAF1O14981 1849 aa21.04■□□□□ 0.96
PNKP-218ENST00000625299 LTN1O94822 1766 aa21.03■□□□□ 0.96
PNKP-218ENST00000625299 ARXQ96QS3 562 aa21.02■□□□□ 0.96
PNKP-218ENST00000625299 SGIP1Q9BQI5 828 aa21.02■□□□□ 0.96
PNKP-218ENST00000625299 PAPPAQ13219 1627 aa21.02■□□□□ 0.96
PNKP-218ENST00000625299 IL2RBP14784 551 aa21.01■□□□□ 0.95
PNKP-218ENST00000625299 ERBB3P21860 1342 aa21.01■□□□□ 0.95
PNKP-218ENST00000625299 SENP3-EIF4A1A0A087X0R7 540 aa20.99■□□□□ 0.95
PNKP-218ENST00000625299 ZNF827Q17R98 1081 aa20.99■□□□□ 0.95
PNKP-218ENST00000625299 NME9Q86XW9 330 aa20.99■□□□□ 0.95
PNKP-218ENST00000625299 KLHL34Q8N239 644 aa20.99■□□□□ 0.95
PNKP-218ENST00000625299 SIN3AQ96ST3 1273 aa20.98■□□□□ 0.95
PNKP-218ENST00000625299 NEUROD1Q13562 356 aa20.97■□□□□ 0.95
PNKP-218ENST00000625299 ANKRD24Q8TF21 1146 aa20.97■□□□□ 0.95
PNKP-218ENST00000625299 USP31Q70CQ4 1352 aa20.97■□□□□ 0.95
PNKP-218ENST00000625299 USP54Q70EL1 1684 aa20.96■□□□□ 0.95
PNKP-218ENST00000625299 TMC1Q8TDI8 760 aa20.96■□□□□ 0.95
PNKP-218ENST00000625299 GPR162Q16538 588 aa20.95■□□□□ 0.94
PNKP-218ENST00000625299 LRRC4BQ9NT99 713 aa20.95■□□□□ 0.94
PNKP-218ENST00000625299 PELP1Q8IZL8 1130 aaKnown RBP20.94■□□□□ 0.94
PNKP-218ENST00000625299 MAP3K5Q99683 1374 aa20.94■□□□□ 0.94
PNKP-218ENST00000625299 C1QTNF8P60827 252 aa20.93■□□□□ 0.94
PNKP-218ENST00000625299 SBNO2Q9Y2G9 1366 aa20.93■□□□□ 0.94
PNKP-218ENST00000625299 CD163L1Q9NR16 1453 aa20.93■□□□□ 0.94
PNKP-218ENST00000625299 HDGFL2Q7Z4V5 671 aaPredicted RBP20.92■□□□□ 0.94
PNKP-218ENST00000625299 DDX54Q8TDD1 881 aaKnown RBP20.92■□□□□ 0.94
PNKP-218ENST00000625299 POLD1P28340 1107 aa20.91■□□□□ 0.94
PNKP-218ENST00000625299 LTV1Q96GA3 475 aaPredicted RBP20.91■□□□□ 0.94
PNKP-218ENST00000625299 SYTL4Q96C24 671 aaPredicted RBP20.9■□□□□ 0.94
PNKP-218ENST00000625299 QSER1Q2KHR3 1735 aa20.9■□□□□ 0.94
PNKP-218ENST00000625299 AKT1S1Q96B36 256 aa20.89■□□□□ 0.93
PNKP-218ENST00000625299 TUBGCP6Q96RT7 1819 aa20.89■□□□□ 0.93
PNKP-218ENST00000625299 KCNQ4P56696 695 aa20.88■□□□□ 0.93
PNKP-218ENST00000625299 SLC12A5Q9H2X9 1139 aa20.88■□□□□ 0.93
PNKP-218ENST00000625299 TFCP2L1Q9NZI6 479 aa20.88■□□□□ 0.93
PNKP-218ENST00000625299 EDC4Q6P2E9 1401 aaKnown RBP20.87■□□□□ 0.93
PNKP-218ENST00000625299 PNPLA7Q6ZV29 1317 aa20.87■□□□□ 0.93
PNKP-218ENST00000625299 GOLGB1Q14789 3259 aaKnown RBP20.87■□□□□ 0.93
PNKP-218ENST00000625299 SLC27A3Q5K4L6 730 aa20.87■□□□□ 0.93
PNKP-218ENST00000625299 DOT1LQ8TEK3 1739 aa20.87■□□□□ 0.93
PNKP-218ENST00000625299 FAM208AQ9UK61 1670 aaKnown RBP20.86■□□□□ 0.93
PNKP-218ENST00000625299 SLC16A10Q8TF71 515 aa20.86■□□□□ 0.93
PNKP-218ENST00000625299 CARD11Q9BXL7 1154 aa20.86■□□□□ 0.93
PNKP-218ENST00000625299 A0A1W2PP64 1363 aa20.85■□□□□ 0.93
PNKP-218ENST00000625299 GIGYF1O75420 1035 aaPredicted RBP20.85■□□□□ 0.93
PNKP-218ENST00000625299 IP6K1Q92551 441 aa20.84■□□□□ 0.93
PNKP-218ENST00000625299 TERF2IPQ9NYB0 399 aa20.84■□□□□ 0.93
PNKP-218ENST00000625299 PRIM1P49642 420 aaKnown RBP20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms