RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 RBM33Q96EV2 1170 aaKnown RBP27.39■■□□□ 1.98
LIME1-210ENST00000621325 IGHDP01880 384 aa27.39■■□□□ 1.97
LIME1-210ENST00000621325 SSH1Q8WYL5 1049 aa27.39■■□□□ 1.97
LIME1-210ENST00000621325 USP31Q70CQ4 1352 aa27.38■■□□□ 1.97
LIME1-210ENST00000621325 PDE4AP27815 886 aa27.38■■□□□ 1.97
LIME1-210ENST00000621325 HSP90AB2PQ58FF8 381 aa27.38■■□□□ 1.97
LIME1-210ENST00000621325 AEBP1Q8IUX7 1158 aa27.38■■□□□ 1.97
LIME1-210ENST00000621325 SMC4Q9NTJ3 1288 aa27.38■■□□□ 1.97
LIME1-210ENST00000621325 LAS1LQ9Y4W2 734 aaKnown RBP27.38■■□□□ 1.97
LIME1-210ENST00000621325 TTC21AQ8NDW8 1320 aa27.37■■□□□ 1.97
LIME1-210ENST00000621325 NALCNQ8IZF0 1738 aa27.36■■□□□ 1.97
LIME1-210ENST00000621325 PEAK1Q9H792 1746 aa27.36■■□□□ 1.97
LIME1-210ENST00000621325 ZNF142P52746 1687 aaPredicted RBP27.34■■□□□ 1.97
LIME1-210ENST00000621325 ZKSCAN2Q63HK3 967 aa27.34■■□□□ 1.97
LIME1-210ENST00000621325 SULT6B1Q6IMI4 303 aa27.34■■□□□ 1.97
LIME1-210ENST00000621325 UBE2Q2Q8WVN8 375 aa27.33■■□□□ 1.97
LIME1-210ENST00000621325 BACH2Q9BYV9 841 aa27.33■■□□□ 1.97
LIME1-210ENST00000621325 ANKARQ7Z5J8 1434 aa27.33■■□□□ 1.97
LIME1-210ENST00000621325 MAP3K19Q56UN5 1328 aa27.33■■□□□ 1.96
LIME1-210ENST00000621325 FAM83GA6ND36 823 aa27.32■■□□□ 1.96
LIME1-210ENST00000621325 FMN2Q9NZ56 1722 aa27.3■■□□□ 1.96
LIME1-210ENST00000621325 TRIM27P14373 513 aa27.3■■□□□ 1.96
LIME1-210ENST00000621325 CHD2O14647 1828 aaKnown RBP27.3■■□□□ 1.96
LIME1-210ENST00000621325 DCTN1Q14203 1278 aa27.29■■□□□ 1.96
LIME1-210ENST00000621325 NUTM2GQ5VZR2 741 aa27.29■■□□□ 1.96
LIME1-210ENST00000621325 DZIP1LQ8IYY4 767 aaKnown RBP27.29■■□□□ 1.96
LIME1-210ENST00000621325 PCDHB15Q9Y5E8 787 aa27.29■■□□□ 1.96
LIME1-210ENST00000621325 PIK3C2AO00443 1686 aa27.29■■□□□ 1.96
LIME1-210ENST00000621325 DLG5Q8TDM6 1919 aa27.28■■□□□ 1.96
LIME1-210ENST00000621325 SETD1BQ9UPS6 1966 aaKnown RBP27.28■■□□□ 1.96
LIME1-210ENST00000621325 FTSJ3Q8IY81 847 aaKnown RBP27.28■■□□□ 1.96
LIME1-210ENST00000621325 NOB1Q9ULX3 412 aaKnown RBP27.28■■□□□ 1.96
LIME1-210ENST00000621325 MVPQ14764 893 aaKnown RBP27.28■■□□□ 1.96
LIME1-210ENST00000621325 RGS3P49796 1198 aa27.27■■□□□ 1.96
LIME1-210ENST00000621325 NLRP6P59044 892 aa27.27■■□□□ 1.96
LIME1-210ENST00000621325 ZNF853P0CG23 659 aa27.26■■□□□ 1.95
LIME1-210ENST00000621325 CALD1Q05682 793 aaKnown RBP27.26■■□□□ 1.95
LIME1-210ENST00000621325 MBIPQ9NS73 344 aa27.26■■□□□ 1.95
LIME1-210ENST00000621325 IFT57Q9NWB7 429 aa27.26■■□□□ 1.95
LIME1-210ENST00000621325 TSPYL6Q8N831 410 aa27.26■■□□□ 1.95
LIME1-210ENST00000621325 GNAI1P63096 354 aa27.25■■□□□ 1.95
LIME1-210ENST00000621325 ATF7IPQ6VMQ6 1270 aa27.25■■□□□ 1.95
LIME1-210ENST00000621325 LMOD3Q0VAK6 560 aa27.24■■□□□ 1.95
LIME1-210ENST00000621325 DNAJC5Q9H3Z4 198 aa27.24■■□□□ 1.95
LIME1-210ENST00000621325 ELL2O00472 640 aaPredicted RBP27.22■■□□□ 1.95
LIME1-210ENST00000621325 PAK3O75914 559 aaPredicted RBP27.22■■□□□ 1.95
LIME1-210ENST00000621325 SBNO1A3KN83 1393 aa27.22■■□□□ 1.95
LIME1-210ENST00000621325 RGPD1P0DJD0 1748 aa27.22■■□□□ 1.95
LIME1-210ENST00000621325 VAMP4O75379 141 aa27.22■■□□□ 1.95
LIME1-210ENST00000621325 ANP32AP39687 249 aaKnown RBP27.22■■□□□ 1.95
LIME1-210ENST00000621325 NPM2Q86SE8 214 aaKnown RBP27.22■■□□□ 1.95
LIME1-210ENST00000621325 FLT4P35916 1363 aa27.22■■□□□ 1.95
LIME1-210ENST00000621325 NPHP4O75161 1426 aaPredicted RBP27.21■■□□□ 1.95
LIME1-210ENST00000621325 AAMPQ13685 434 aa27.21■■□□□ 1.95
LIME1-210ENST00000621325 AMPHP49418 695 aa27.21■■□□□ 1.95
LIME1-210ENST00000621325 ALDH1L2Q3SY69 923 aa27.21■■□□□ 1.95
LIME1-210ENST00000621325 CFAP44Q96MT7 982 aa27.21■■□□□ 1.95
LIME1-210ENST00000621325 PHF8Q9UPP1 1060 aa27.21■■□□□ 1.95
LIME1-210ENST00000621325 ABTB2Q8N961 1025 aa27.2■■□□□ 1.95
LIME1-210ENST00000621325 ITPRIPQ8IWB1 547 aa27.19■■□□□ 1.94
LIME1-210ENST00000621325 KIF16BQ96L93 1317 aa27.18■■□□□ 1.94
LIME1-210ENST00000621325 TMEM57Q8N5G2 664 aa27.18■■□□□ 1.94
LIME1-210ENST00000621325 C8orf58Q8NAV2 365 aa27.18■■□□□ 1.94
LIME1-210ENST00000621325 MARF1Q9Y4F3 1742 aaKnown RBP27.17■■□□□ 1.94
LIME1-210ENST00000621325 MCM10Q7L590 875 aa27.17■■□□□ 1.94
LIME1-210ENST00000621325 C14orf37Q86TY3 774 aa27.17■■□□□ 1.94
LIME1-210ENST00000621325 ADGRL3Q9HAR2 1447 aa27.16■■□□□ 1.94
LIME1-210ENST00000621325 ARHGEF10O15013 1369 aa27.16■■□□□ 1.94
LIME1-210ENST00000621325 EYA1Q99502 592 aa27.16■■□□□ 1.94
LIME1-210ENST00000621325 IPO8O15397 1037 aaKnown RBP27.15■■□□□ 1.94
LIME1-210ENST00000621325 ZNF428Q96B54 188 aa27.15■■□□□ 1.94
LIME1-210ENST00000621325 FOXO3O43524 673 aa27.14■■□□□ 1.94
LIME1-210ENST00000621325 TWISTNBQ3B726 338 aaPredicted RBP27.14■■□□□ 1.94
LIME1-210ENST00000621325 ESCO1Q5FWF5 840 aa27.14■■□□□ 1.94
LIME1-210ENST00000621325 MRPL50Q8N5N7 158 aaKnown RBP27.14■■□□□ 1.94
LIME1-210ENST00000621325 IPO9Q96P70 1041 aaKnown RBP27.14■■□□□ 1.94
LIME1-210ENST00000621325 C8orf34Q49A92 452 aa27.14■■□□□ 1.93
LIME1-210ENST00000621325 DDX19BQ9UMR2 479 aa27.13■■□□□ 1.93
LIME1-210ENST00000621325 HOXC9P31274 260 aa27.12■■□□□ 1.93
LIME1-210ENST00000621325 BRPF1P55201 1214 aaPredicted RBP27.12■■□□□ 1.93
LIME1-210ENST00000621325 FAM161AQ3B820 660 aa27.11■■□□□ 1.93
LIME1-210ENST00000621325 IGSF1Q8N6C5 1336 aa27.11■■□□□ 1.93
LIME1-210ENST00000621325 MTHFSDQ2M296 383 aaKnown RBP27.11■■□□□ 1.93
LIME1-210ENST00000621325 RWDD1Q9H446 243 aaPredicted RBP27.11■■□□□ 1.93
LIME1-210ENST00000621325 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.1■■□□□ 1.93
LIME1-210ENST00000621325 KDRP35968 1356 aa27.1■■□□□ 1.93
LIME1-210ENST00000621325 KRT24Q2M2I5 525 aa27.1■■□□□ 1.93
LIME1-210ENST00000621325 NOP58Q9Y2X3 529 aaKnown RBP27.09■■□□□ 1.93
LIME1-210ENST00000621325 PSME1Q06323 249 aa27.08■■□□□ 1.93
LIME1-210ENST00000621325 LTV1Q96GA3 475 aaPredicted RBP27.08■■□□□ 1.93
LIME1-210ENST00000621325 CHL1O00533 1208 aa27.07■■□□□ 1.92
LIME1-210ENST00000621325 ORAI2Q96SN7 254 aa27.07■■□□□ 1.92
LIME1-210ENST00000621325 ZBTB40Q9NUA8 1239 aa27.07■■□□□ 1.92
LIME1-210ENST00000621325 PDZRN3Q9UPQ7 1066 aa27.07■■□□□ 1.92
LIME1-210ENST00000621325 USP54Q70EL1 1684 aa27.06■■□□□ 1.92
LIME1-210ENST00000621325 XPCQ01831 940 aaPredicted RBP27.04■■□□□ 1.92
LIME1-210ENST00000621325 CRB1P82279 1406 aa27.04■■□□□ 1.92
LIME1-210ENST00000621325 MIS18AQ9NYP9 233 aa27.04■■□□□ 1.92
LIME1-210ENST00000621325 KIF24Q5T7B8 1368 aa27.03■■□□□ 1.92
LIME1-210ENST00000621325 ARHGAP45Q92619 1136 aa27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 136.8 ms