RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 SENP3Q9H4L4 574 aaPredicted RBP24.39■■□□□ 1.49
PDLIM3-212ENST00000620787 FOXD4L1Q9NU39 408 aa24.39■■□□□ 1.49
PDLIM3-212ENST00000620787 TMEM131LA2VDJ0 1609 aa24.39■■□□□ 1.49
PDLIM3-212ENST00000620787 YTHDC2Q9H6S0 1430 aaKnown RBP24.39■■□□□ 1.49
PDLIM3-212ENST00000620787 MAP2P11137 1827 aaKnown RBP24.39■■□□□ 1.49
PDLIM3-212ENST00000620787 HDGFL2Q7Z4V5 671 aaPredicted RBP24.38■■□□□ 1.49
PDLIM3-212ENST00000620787 HSP90AA1P07900 732 aaKnown RBP24.37■■□□□ 1.49
PDLIM3-212ENST00000620787 ABCC4O15439 1325 aa24.37■■□□□ 1.49
PDLIM3-212ENST00000620787 TSPYL6Q8N831 410 aa24.37■■□□□ 1.49
PDLIM3-212ENST00000620787 DIP2CQ9Y2E4 1556 aa24.37■■□□□ 1.49
PDLIM3-212ENST00000620787 ARHGEF40Q8TER5 1519 aa24.36■■□□□ 1.49
PDLIM3-212ENST00000620787 NFE2L2Q16236 605 aa24.36■■□□□ 1.49
PDLIM3-212ENST00000620787 GAS2L2Q8NHY3 880 aa24.36■■□□□ 1.49
PDLIM3-212ENST00000620787 AK9Q5TCS8 1911 aa24.36■■□□□ 1.49
PDLIM3-212ENST00000620787 KNDC1Q76NI1 1749 aa24.36■■□□□ 1.49
PDLIM3-212ENST00000620787 SSFA2P28290 1259 aa24.35■■□□□ 1.49
PDLIM3-212ENST00000620787 PHACTR3Q96KR7 559 aa24.35■■□□□ 1.49
PDLIM3-212ENST00000620787 THUMPD2Q9BTF0 503 aaKnown RBP24.35■■□□□ 1.49
PDLIM3-212ENST00000620787 DLG5Q8TDM6 1919 aa24.35■■□□□ 1.49
PDLIM3-212ENST00000620787 CLEC17AQ6ZS10 378 aa24.35■■□□□ 1.49
PDLIM3-212ENST00000620787 PREX1Q8TCU6 1659 aa24.34■■□□□ 1.49
PDLIM3-212ENST00000620787 POLKQ9UBT6 870 aa24.34■■□□□ 1.49
PDLIM3-212ENST00000620787 CDC45O75419 566 aa24.33■■□□□ 1.49
PDLIM3-212ENST00000620787 TRIM44Q96DX7 344 aaPredicted RBP24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 CDK19Q9BWU1 502 aa24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 CABP1Q9NZU7 370 aa24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 FBLN1P23142 703 aa24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 IFT57Q9NWB7 429 aa24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 SLC52A1Q9NWF4 448 aa24.32■■□□□ 1.48
PDLIM3-212ENST00000620787 ZNF853P0CG23 659 aa24.31■■□□□ 1.48
PDLIM3-212ENST00000620787 GNAI1P63096 354 aa24.31■■□□□ 1.48
PDLIM3-212ENST00000620787 CALD1Q05682 793 aaKnown RBP24.31■■□□□ 1.48
PDLIM3-212ENST00000620787 HMOX1P09601 288 aa24.3■■□□□ 1.48
PDLIM3-212ENST00000620787 GSPT1P15170 499 aaKnown RBP24.3■■□□□ 1.48
PDLIM3-212ENST00000620787 MBIPQ9NS73 344 aa24.3■■□□□ 1.48
PDLIM3-212ENST00000620787 ALKQ9UM73 1620 aa24.3■■□□□ 1.48
PDLIM3-212ENST00000620787 IBTKQ9P2D0 1353 aaPredicted RBP24.29■■□□□ 1.48
PDLIM3-212ENST00000620787 ELL2O00472 640 aaPredicted RBP24.28■■□□□ 1.48
PDLIM3-212ENST00000620787 BAG4O95429 457 aaKnown RBP24.28■■□□□ 1.48
PDLIM3-212ENST00000620787 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.28■■□□□ 1.48
PDLIM3-212ENST00000620787 YEATS2Q9ULM3 1422 aa24.28■■□□□ 1.48
PDLIM3-212ENST00000620787 KLHL40Q2TBA0 621 aa24.27■■□□□ 1.48
PDLIM3-212ENST00000620787 PLEKHM2Q8IWE5 1019 aa24.27■■□□□ 1.48
PDLIM3-212ENST00000620787 ATP7BP35670 1465 aa24.27■■□□□ 1.48
PDLIM3-212ENST00000620787 GOLGA6L22H0YM25 854 aa24.27■■□□□ 1.48
PDLIM3-212ENST00000620787 RAPGEF3O95398 923 aa24.26■■□□□ 1.47
PDLIM3-212ENST00000620787 TWISTNBQ3B726 338 aaPredicted RBP24.26■■□□□ 1.47
PDLIM3-212ENST00000620787 CCDC173Q0VFZ6 552 aa24.25■■□□□ 1.47
PDLIM3-212ENST00000620787 PPP1R9BQ96SB3 815 aa24.25■■□□□ 1.47
PDLIM3-212ENST00000620787 RABEP1Q15276 862 aa24.24■■□□□ 1.47
PDLIM3-212ENST00000620787 API5Q9BZZ5 524 aaKnown RBP24.24■■□□□ 1.47
PDLIM3-212ENST00000620787 KIF24Q5T7B8 1368 aa24.24■■□□□ 1.47
PDLIM3-212ENST00000620787 C8orf58Q8NAV2 365 aa24.24■■□□□ 1.47
PDLIM3-212ENST00000620787 NPM1P06748 294 aaKnown RBP eCLIP24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 IL13P35225 146 aa24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 DDX49Q9Y6V7 483 aaKnown RBP24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 NEO1Q92859 1461 aa24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 CDK12Q9NYV4 1490 aaPredicted RBP24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 NASPP49321 788 aaPredicted RBP24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 TTC22Q5TAA0 569 aa24.23■■□□□ 1.47
PDLIM3-212ENST00000620787 RICTORQ6R327 1708 aa24.22■■□□□ 1.47
PDLIM3-212ENST00000620787 RRP9O43818 475 aaKnown RBP24.22■■□□□ 1.47
PDLIM3-212ENST00000620787 DCTPP1Q9H773 170 aa24.22■■□□□ 1.47
PDLIM3-212ENST00000620787 EMILIN1Q9Y6C2 1016 aa24.22■■□□□ 1.47
PDLIM3-212ENST00000620787 CFAP44Q96MT7 982 aa24.22■■□□□ 1.47
PDLIM3-212ENST00000620787 HSP90AA2PQ14568 343 aaPredicted RBP24.21■■□□□ 1.47
PDLIM3-212ENST00000620787 RIMS2Q9UQ26 1411 aa24.2■■□□□ 1.47
PDLIM3-212ENST00000620787 CYP2E1P05181 493 aaPredicted RBP24.2■■□□□ 1.46
PDLIM3-212ENST00000620787 USP26Q9BXU7 913 aa24.2■■□□□ 1.46
PDLIM3-212ENST00000620787 ATP10DQ9P241 1426 aa24.19■■□□□ 1.46
PDLIM3-212ENST00000620787 DLC1Q96QB1 1528 aa24.19■■□□□ 1.46
PDLIM3-212ENST00000620787 ZNF445P59923 1031 aa24.17■■□□□ 1.46
PDLIM3-212ENST00000620787 NUCB2P80303 420 aa24.17■■□□□ 1.46
PDLIM3-212ENST00000620787 LMOD3Q0VAK6 560 aa24.17■■□□□ 1.46
PDLIM3-212ENST00000620787 C16orf71Q8IYS4 520 aaPredicted RBP24.17■■□□□ 1.46
PDLIM3-212ENST00000620787 MCTP1Q6DN14 999 aa24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 RIMBP3CA6NJZ7 1639 aa24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 RIMBP3BA6NNM3 1639 aa24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 RIMBP3Q9UFD9 1639 aa24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 INTS3Q68E01 1043 aaKnown RBP24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 SETD1AO15047 1707 aaKnown RBP24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 EDC4Q6P2E9 1401 aaKnown RBP24.16■■□□□ 1.46
PDLIM3-212ENST00000620787 FAM83GA6ND36 823 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 ZSCAN30Q86W11 494 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 ANKRD44Q8N8A2 993 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 LMBRD1Q9NUN5 540 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 RGS12O14924 1447 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 GLIPR1L2Q4G1C9 344 aa24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 CPSF1Q10570 1443 aaKnown RBP24.15■■□□□ 1.46
PDLIM3-212ENST00000620787 OTUD7AQ8TE49 926 aaPredicted RBP24.14■■□□□ 1.46
PDLIM3-212ENST00000620787 AATKQ6ZMQ8 1374 aa24.14■■□□□ 1.45
PDLIM3-212ENST00000620787 TPM2P07951 284 aa24.14■■□□□ 1.45
PDLIM3-212ENST00000620787 PKP1Q13835 747 aa24.14■■□□□ 1.45
PDLIM3-212ENST00000620787 ANP32BQ92688 251 aaKnown RBP24.13■■□□□ 1.45
PDLIM3-212ENST00000620787 WAPLQ7Z5K2 1190 aa24.13■■□□□ 1.45
PDLIM3-212ENST00000620787 NME9Q86XW9 330 aa24.13■■□□□ 1.45
PDLIM3-212ENST00000620787 ZSCAN23Q3MJ62 389 aa24.12■■□□□ 1.45
PDLIM3-212ENST00000620787 DCTN1Q14203 1278 aa24.11■■□□□ 1.45
PDLIM3-212ENST00000620787 CAVIN1Q6NZI2 390 aaKnown RBP24.11■■□□□ 1.45
PDLIM3-212ENST00000620787 OSCARQ8IYS5 282 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms