RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 EDC4Q6P2E9 1401 aaKnown RBP26.83■■□□□ 1.89
CCDC28A-203ENST00000617445 TOM1L2Q6ZVM7 507 aa26.83■■□□□ 1.89
CCDC28A-203ENST00000617445 WDR17Q8IZU2 1322 aa26.83■■□□□ 1.89
CCDC28A-203ENST00000617445 USP54Q70EL1 1684 aa26.82■■□□□ 1.88
CCDC28A-203ENST00000617445 DISP2A7MBM2 1401 aa26.82■■□□□ 1.88
CCDC28A-203ENST00000617445 AXIN2Q9Y2T1 843 aa26.82■■□□□ 1.88
CCDC28A-203ENST00000617445 NFAT5O94916 1531 aa26.81■■□□□ 1.88
CCDC28A-203ENST00000617445 ABCC6O95255 1503 aa26.81■■□□□ 1.88
CCDC28A-203ENST00000617445 PARP4Q9UKK3 1724 aaKnown RBP26.81■■□□□ 1.88
CCDC28A-203ENST00000617445 SOX12O15370 315 aa26.8■■□□□ 1.88
CCDC28A-203ENST00000617445 CDCA7Q9BWT1 371 aaPredicted RBP26.8■■□□□ 1.88
CCDC28A-203ENST00000617445 A0A1W2PP64 1363 aa26.79■■□□□ 1.88
CCDC28A-203ENST00000617445 NME9Q86XW9 330 aa26.78■■□□□ 1.88
CCDC28A-203ENST00000617445 TRIM37O94972 964 aa26.77■■□□□ 1.88
CCDC28A-203ENST00000617445 EN1Q05925 392 aaPredicted RBP26.77■■□□□ 1.88
CCDC28A-203ENST00000617445 CARD10Q9BWT7 1032 aa26.77■■□□□ 1.88
CCDC28A-203ENST00000617445 RGPD5Q99666 1765 aa26.76■■□□□ 1.88
CCDC28A-203ENST00000617445 TNS1Q9HBL0 1735 aaKnown RBP26.76■■□□□ 1.88
CCDC28A-203ENST00000617445 USP47Q96K76 1375 aa26.76■■□□□ 1.87
CCDC28A-203ENST00000617445 TMF1P82094 1093 aa26.76■■□□□ 1.87
CCDC28A-203ENST00000617445 CSB-PGBD3P0DP91 1061 aa26.75■■□□□ 1.87
CCDC28A-203ENST00000617445 DDB1Q16531 1140 aa26.74■■□□□ 1.87
CCDC28A-203ENST00000617445 PCGF6Q9BYE7 350 aa26.74■■□□□ 1.87
CCDC28A-203ENST00000617445 PARD3Q8TEW0 1356 aa26.73■■□□□ 1.87
CCDC28A-203ENST00000617445 CDCA8Q53HL2 280 aa26.73■■□□□ 1.87
CCDC28A-203ENST00000617445 SRCAPQ6ZRS2 3230 aa26.73■■□□□ 1.87
CCDC28A-203ENST00000617445 CCDC7Q96M83 1385 aa26.71■■□□□ 1.87
CCDC28A-203ENST00000617445 APBA3O96018 575 aa26.71■■□□□ 1.87
CCDC28A-203ENST00000617445 CAMKK2Q96RR4 588 aa26.7■■□□□ 1.86
CCDC28A-203ENST00000617445 OVOS2A0A0G2JMS6 1433 aa26.7■■□□□ 1.86
CCDC28A-203ENST00000617445 OVOS2A0A0J9YW53 1432 aa26.7■■□□□ 1.86
CCDC28A-203ENST00000617445 OVOS2Q6IE36 1432 aa26.7■■□□□ 1.86
CCDC28A-203ENST00000617445 WNK3Q9BYP7 1800 aa26.69■■□□□ 1.86
CCDC28A-203ENST00000617445 ANKRD36BQ8N2N9 1353 aa26.69■■□□□ 1.86
CCDC28A-203ENST00000617445 LTN1O94822 1766 aa26.69■■□□□ 1.86
CCDC28A-203ENST00000617445 LRRC37A3O60309 1634 aa26.68■■□□□ 1.86
CCDC28A-203ENST00000617445 EZH2Q15910 746 aaKnown RBP26.67■■□□□ 1.86
CCDC28A-203ENST00000617445 COG3Q96JB2 828 aa26.66■■□□□ 1.86
CCDC28A-203ENST00000617445 ERBB3P21860 1342 aa26.65■■□□□ 1.86
CCDC28A-203ENST00000617445 PEAK1Q9H792 1746 aa26.65■■□□□ 1.86
CCDC28A-203ENST00000617445 EXOC5O00471 708 aa26.64■■□□□ 1.86
CCDC28A-203ENST00000617445 BCL9O00512 1426 aa26.64■■□□□ 1.85
CCDC28A-203ENST00000617445 SBF2Q86WG5 1849 aa26.61■■□□□ 1.85
CCDC28A-203ENST00000617445 ANKRD24Q8TF21 1146 aa26.61■■□□□ 1.85
CCDC28A-203ENST00000617445 IP6K1Q92551 441 aa26.61■■□□□ 1.85
CCDC28A-203ENST00000617445 NLRP2Q9NX02 1062 aa26.61■■□□□ 1.85
CCDC28A-203ENST00000617445 PSDA5PKW4 1024 aaPredicted RBP26.6■■□□□ 1.85
CCDC28A-203ENST00000617445 MARCH10Q8NA82 808 aaPredicted RBP26.6■■□□□ 1.85
CCDC28A-203ENST00000617445 BCL11BQ9C0K0 894 aaPredicted RBP26.59■■□□□ 1.85
CCDC28A-203ENST00000617445 PLSCR1O15162 318 aa26.58■■□□□ 1.85
CCDC28A-203ENST00000617445 NBPF14Q5TI25 921 aa26.57■■□□□ 1.84
CCDC28A-203ENST00000617445 FYB1O15117 783 aa26.56■■□□□ 1.84
CCDC28A-203ENST00000617445 IL2RBP14784 551 aa26.56■■□□□ 1.84
CCDC28A-203ENST00000617445 R3HDM1Q15032 1099 aaKnown RBP26.56■■□□□ 1.84
CCDC28A-203ENST00000617445 RREB1Q92766 1687 aa26.56■■□□□ 1.84
CCDC28A-203ENST00000617445 LRP5O75197 1615 aa26.55■■□□□ 1.84
CCDC28A-203ENST00000617445 CCER1Q8TC90 406 aaPredicted RBP26.55■■□□□ 1.84
CCDC28A-203ENST00000617445 TNS2Q63HR2 1409 aa26.55■■□□□ 1.84
CCDC28A-203ENST00000617445 RGPD3A6NKT7 1758 aaPredicted RBP26.54■■□□□ 1.84
CCDC28A-203ENST00000617445 RGPD4Q7Z3J3 1758 aa26.54■■□□□ 1.84
CCDC28A-203ENST00000617445 MAP3K19Q56UN5 1328 aa26.54■■□□□ 1.84
CCDC28A-203ENST00000617445 FAM208AQ9UK61 1670 aaKnown RBP26.54■■□□□ 1.84
CCDC28A-203ENST00000617445 AMPHP49418 695 aa26.53■■□□□ 1.84
CCDC28A-203ENST00000617445 HOXC9P31274 260 aa26.51■■□□□ 1.83
CCDC28A-203ENST00000617445 NUP188Q5SRE5 1749 aa26.51■■□□□ 1.83
CCDC28A-203ENST00000617445 RTL1A6NKG5 1358 aa26.5■■□□□ 1.83
CCDC28A-203ENST00000617445 GGNBP2Q9H3C7 697 aa26.5■■□□□ 1.83
CCDC28A-203ENST00000617445 LTV1Q96GA3 475 aaPredicted RBP26.47■■□□□ 1.83
CCDC28A-203ENST00000617445 KIF20BQ96Q89 1820 aa26.46■■□□□ 1.83
CCDC28A-203ENST00000617445 EIF4G2P78344 907 aaKnown RBP eCLIP26.46■■□□□ 1.83
CCDC28A-203ENST00000617445 MYOM1P52179 1685 aa26.45■■□□□ 1.82
CCDC28A-203ENST00000617445 FBLN1P23142 703 aa26.45■■□□□ 1.82
CCDC28A-203ENST00000617445 CARD14Q9BXL6 1004 aa26.45■■□□□ 1.82
CCDC28A-203ENST00000617445 KIF24Q5T7B8 1368 aa26.45■■□□□ 1.82
CCDC28A-203ENST00000617445 KAT6BQ8WYB5 2073 aa26.44■■□□□ 1.82
CCDC28A-203ENST00000617445 PTF1AQ7RTS3 328 aa26.44■■□□□ 1.82
CCDC28A-203ENST00000617445 RRS1Q15050 365 aaKnown RBP26.43■■□□□ 1.82
CCDC28A-203ENST00000617445 NSD3Q9BZ95 1437 aa26.41■■□□□ 1.82
CCDC28A-203ENST00000617445 SMG6Q86US8 1419 aaKnown RBP26.4■■□□□ 1.82
CCDC28A-203ENST00000617445 NHSQ6T4R5 1651 aa26.4■■□□□ 1.82
CCDC28A-203ENST00000617445 PROM2Q8N271 834 aa26.39■■□□□ 1.82
CCDC28A-203ENST00000617445 CGNL1Q0VF96 1302 aa26.39■■□□□ 1.81
CCDC28A-203ENST00000617445 INSRP06213 1382 aa26.38■■□□□ 1.81
CCDC28A-203ENST00000617445 KCNQ2O43526 872 aa26.38■■□□□ 1.81
CCDC28A-203ENST00000617445 FLT4P35916 1363 aa26.37■■□□□ 1.81
CCDC28A-203ENST00000617445 TXNRD1Q16881 649 aa26.37■■□□□ 1.81
CCDC28A-203ENST00000617445 HSPA5P11021 654 aaKnown RBP26.36■■□□□ 1.81
CCDC28A-203ENST00000617445 ACSBG1Q96GR2 724 aa26.36■■□□□ 1.81
CCDC28A-203ENST00000617445 RGPD2P0DJD1 1756 aa26.35■■□□□ 1.81
CCDC28A-203ENST00000617445 ZCRB1Q8TBF4 217 aaKnown RBP26.35■■□□□ 1.81
CCDC28A-203ENST00000617445 DDX54Q8TDD1 881 aaKnown RBP26.35■■□□□ 1.81
CCDC28A-203ENST00000617445 HSP90AB2PQ58FF8 381 aa26.34■■□□□ 1.81
CCDC28A-203ENST00000617445 NBPF6Q5VWK0 638 aa26.34■■□□□ 1.81
CCDC28A-203ENST00000617445 NBPF4Q96M43 638 aa26.34■■□□□ 1.81
CCDC28A-203ENST00000617445 POLR3GLQ9BT43 218 aa26.33■■□□□ 1.81
CCDC28A-203ENST00000617445 RAPGEF4Q8WZA2 1011 aa26.32■■□□□ 1.8
CCDC28A-203ENST00000617445 SPON1Q9HCB6 807 aa26.32■■□□□ 1.8
CCDC28A-203ENST00000617445 ANO8Q9HCE9 1232 aaPredicted RBP26.31■■□□□ 1.8
CCDC28A-203ENST00000617445 BTAF1O14981 1849 aa26.3■■□□□ 1.8
CCDC28A-203ENST00000617445 STK32BQ9NY57 414 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms