RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 C8orf37Q96NL8 207 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 PDZRN3Q9UPQ7 1066 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 KIF3AQ9Y496 699 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 EXOC5O00471 708 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 CTDP1Q9Y5B0 961 aaPredicted RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 RRP12Q5JTH9 1297 aaKnown RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 ZNF219Q9P2Y4 722 aaPredicted RBP12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 EXOC6BQ9Y2D4 811 aa12.34□□□□□ -0.43
SMARCA1-205ENST00000617310 RAPGEF6Q8TEU7 1601 aa12.33□□□□□ -0.43
SMARCA1-205ENST00000617310 GPTP24298 496 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 PDE4CQ08493 712 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC57Q2TAC2 916 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 ANKRD24Q8TF21 1146 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 WDR63Q8IWG1 891 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 ZBTB3Q9H5J0 574 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.44
SMARCA1-205ENST00000617310 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 TOM1O60784 492 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 MSH6P52701 1360 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 RNF20Q5VTR2 975 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 INTS3Q68E01 1043 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ACSBG1Q96GR2 724 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ZNF518AQ6AHZ1 1483 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 ZMYM3Q14202 1370 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 PES1O00541 588 aaKnown RBP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 STARD3NLO95772 234 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 FKBP4Q02790 459 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 SSH1Q8WYL5 1049 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 TEX14Q8IWB6 1497 aa12.32□□□□□ -0.44
SMARCA1-205ENST00000617310 SKAP1Q86WV1 359 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 LRRC59Q96AG4 307 aaKnown RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 AEBP1Q8IUX7 1158 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TMEM57Q8N5G2 664 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 JARID2Q92833 1246 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 RPRD2Q5VT52 1461 aaKnown RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 IKQ13123 557 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 FAM135AQ9P2D6 1515 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP2B1P20020 1258 aa12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 TAF7Q15545 349 aaPredicted RBP12.31□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP2B2Q01814 1243 aa12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 PIP4K2AP48426 406 aaPredicted RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 CCT4P50991 539 aaKnown RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 NAP1L5Q96NT1 182 aaPredicted RBP12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 RIMS2Q9UQ26 1411 aa12.3□□□□□ -0.44
SMARCA1-205ENST00000617310 ERICH2A1L162 156 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 SLC39A6Q13433 755 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 CEP126Q9P2H0 1117 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 TTC21BQ7Z4L5 1316 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 DDX49Q9Y6V7 483 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 MAP3K1Q13233 1512 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 PHF14O94880 888 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 PDE3AQ14432 1141 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 DDX17Q92841 729 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC34Q96HJ3 373 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 MYD88Q99836 296 aa12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 SCAF11Q99590 1463 aaKnown RBP12.29□□□□□ -0.44
SMARCA1-205ENST00000617310 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 C20orf194Q5TEA3 1177 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 AACSQ86V21 672 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ABCF2Q9UG63 623 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 RBM5P52756 815 aaKnown RBP eCLIP12.28□□□□□ -0.449e-8■□□□□ 9.1
SMARCA1-205ENST00000617310 SLFN5Q08AF3 891 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CHAF1AQ13111 956 aaPredicted RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 TRIM29Q14134 588 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 TTC39AQ5SRH9 613 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CNTROBQ8N137 903 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ORAI2Q96SN7 254 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 NPHP3Q7Z494 1330 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 DEKP35659 375 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 CDC45O75419 566 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 MVPQ14764 893 aaKnown RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 SYAP1Q96A49 352 aaPredicted RBP12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 C19orf44Q9H6X5 657 aa12.28□□□□□ -0.44
SMARCA1-205ENST00000617310 ABCC2Q92887 1545 aa12.27□□□□□ -0.44
SMARCA1-205ENST00000617310 CCDC158Q5M9N0 1113 aa12.27□□□□□ -0.44
SMARCA1-205ENST00000617310 ZPR1O75312 459 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 AMOTQ4VCS5 1084 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 NUP160Q12769 1436 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 TCEAL9Q9UHQ7 104 aa12.27□□□□□ -0.45
SMARCA1-205ENST00000617310 LRRCC1Q9C099 1032 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 BCL11BQ9C0K0 894 aaPredicted RBP12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 CWC22Q9HCG8 908 aaKnown RBP12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 NEK4P51957 841 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 NUTM1Q86Y26 1132 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 SMC3Q9UQE7 1217 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 ABCC10Q5T3U5 1492 aa12.26□□□□□ -0.45
SMARCA1-205ENST00000617310 IDH1O75874 414 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 MSNP26038 577 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 IFNL2Q8IZJ0 200 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 TRMT112Q9UI30 125 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 UGGT2Q9NYU1 1516 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 DCAF8L1A6NGE4 600 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 SMARCA5O60264 1052 aaPredicted RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 FANCIQ9NVI1 1328 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 L1TD1Q5T7N2 865 aaKnown RBP12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 DISP1Q96F81 1524 aa12.25□□□□□ -0.45
SMARCA1-205ENST00000617310 CFAP43Q8NDM7 1665 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms