RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 PARP4Q9UKK3 1724 aaKnown RBP4.13□□□□□ -1.75
LPP-220ENST00000617246 CCDC152Q4G0S7 254 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 AATKQ6ZMQ8 1374 aa4.13□□□□□ -1.75
LPP-220ENST00000617246 NPHP4O75161 1426 aaPredicted RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 HMMRO75330 724 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 CSPP1Q1MSJ5 1256 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 ZBTB33Q86T24 672 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 EYA3Q99504 573 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 NYXQ9GZU5 481 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 TPM2P07951 284 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 DDB1Q16531 1140 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 PDZRN3Q9UPQ7 1066 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 KTN1Q86UP2 1357 aaKnown RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 NUTM2FA1L443 756 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 UTP14AQ9BVJ6 771 aaKnown RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 SRGAP2BP0DMP2 458 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 TNPO1Q92973 898 aaKnown RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 CERKQ8TCT0 537 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 PABPC4Q13310 644 aaKnown RBP eCLIP4.12□□□□□ -1.75
LPP-220ENST00000617246 CACNA1SQ13698 1873 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 CASKIN1Q8WXD9 1431 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 ACEP12821 1306 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 MYH13Q9UKX3 1938 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 ZSCAN29Q8IWY8 852 aaPredicted RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 PPP2R3CQ969Q6 453 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 SPC25Q9HBM1 224 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 GPBP1L1Q9HC44 474 aaPredicted RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 CHD2O14647 1828 aaKnown RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 IQGAP3Q86VI3 1631 aa4.12□□□□□ -1.75
LPP-220ENST00000617246 ABT1Q9ULW3 272 aaKnown RBP4.12□□□□□ -1.75
LPP-220ENST00000617246 BICDL1Q6ZP65 573 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 PLEKHH1Q9ULM0 1364 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 GOLGA6L22H0YM25 854 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 WDR78Q5VTH9 848 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 TEX13AQ9BXU3 409 aaPredicted RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 KIAA1210Q9ULL0 1709 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 OGFOD1Q8N543 542 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 UQCRHP07919 91 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 MFAP1P55081 439 aaKnown RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 PLEKHO1Q53GL0 409 aaPredicted RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 MYCNP04198 464 aaPredicted RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 SPATA31A6Q5VVP1 1343 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 TRAPPC8Q9Y2L5 1435 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 DCAF11Q8TEB1 546 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 JCADQ9P266 1359 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 ECE1P42892 770 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 RPGRIP1LQ68CZ1 1315 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 GLRX3O76003 335 aaKnown RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 ODF2Q5BJF6 829 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 GCC1Q96CN9 775 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 ARHGEF5Q12774 1597 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 CLASP1Q7Z460 1538 aa4.11□□□□□ -1.75
LPP-220ENST00000617246 IGHMBP2P38935 993 aaKnown RBP4.11□□□□□ -1.75
LPP-220ENST00000617246 KIAA1211Q6ZU35 1233 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 ERC1Q8IUD2 1116 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 ZNF692Q9BU19 519 aaPredicted RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 ZNF622Q969S3 477 aaKnown RBP eCLIP4.1□□□□□ -1.75
LPP-220ENST00000617246 TFCP2L1Q9NZI6 479 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 XBP1P17861 261 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 VSIG10Q8N0Z9 540 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 GAS2L2Q8NHY3 880 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 HMGB1P09429 215 aaKnown RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 BRMS1Q9HCU9 246 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 MAP3K1Q13233 1512 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 NWD2Q9ULI1 1742 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 PPP4R3BQ5MIZ7 849 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 CPLX2Q6PUV4 134 aaKnown RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 CCDC82Q8N4S0 544 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 PNISRQ8TF01 805 aaKnown RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 ADGRB3O60242 1522 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 TNNT3P45378 269 aaPredicted RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 SCAF11Q99590 1463 aaKnown RBP4.1□□□□□ -1.75
LPP-220ENST00000617246 TRAF1Q13077 416 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 TPM4P67936 248 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 STARD3NLO95772 234 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 RSPH6AQ9H0K4 717 aa4.1□□□□□ -1.75
LPP-220ENST00000617246 DNAJC2Q99543 621 aaKnown RBP4.09□□□□□ -1.75
LPP-220ENST00000617246 MLH3Q9UHC1 1453 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 SAMD1Q6SPF0 538 aaPredicted RBP4.09□□□□□ -1.75
LPP-220ENST00000617246 NUP160Q12769 1436 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 REC8O95072 547 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 PPP1R42Q7Z4L9 355 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 RICTORQ6R327 1708 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 CCDC125Q86Z20 511 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 KIF4AO95239 1232 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 CABP4P57796 275 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 HS1BP3Q53T59 392 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 NBPF15Q8N660 670 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 MYH8P13535 1937 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 APBA3O96018 575 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 LRSAM1Q6UWE0 723 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 FERMT2Q96AC1 680 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 ZSCAN25Q6NSZ9 544 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 HOMER2Q9NSB8 354 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 EAPPQ56P03 285 aaPredicted RBP4.09□□□□□ -1.75
LPP-220ENST00000617246 IQSEC2Q5JU85 1478 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 CCDC27Q2M243 656 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 SCLT1Q96NL6 688 aa4.09□□□□□ -1.75
LPP-220ENST00000617246 NLRP6P59044 892 aa4.09□□□□□ -1.76
LPP-220ENST00000617246 YY1P25490 414 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 234 ms