RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 TOM1L2Q6ZVM7 507 aa29.62■■■□□ 2.33
TRAPPC3-208ENST00000616074 NFAT5O94916 1531 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 SOX12O15370 315 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 ARHGEF25Q86VW2 580 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 KCNH5Q8NCM2 988 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 CARD11Q9BXL7 1154 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 WDR17Q8IZU2 1322 aa29.61■■■□□ 2.33
TRAPPC3-208ENST00000616074 SBF2Q86WG5 1849 aa29.6■■■□□ 2.33
TRAPPC3-208ENST00000616074 OVOS2A0A0G2JMS6 1433 aa29.6■■■□□ 2.33
TRAPPC3-208ENST00000616074 OVOS2A0A0J9YW53 1432 aa29.6■■■□□ 2.33
TRAPPC3-208ENST00000616074 OVOS2Q6IE36 1432 aa29.6■■■□□ 2.33
TRAPPC3-208ENST00000616074 CD163L1Q9NR16 1453 aa29.57■■■□□ 2.32
TRAPPC3-208ENST00000616074 USP54Q70EL1 1684 aa29.56■■■□□ 2.32
TRAPPC3-208ENST00000616074 TONSLQ96HA7 1378 aa29.56■■■□□ 2.32
TRAPPC3-208ENST00000616074 DDB1Q16531 1140 aa29.56■■■□□ 2.32
TRAPPC3-208ENST00000616074 C11orf95C9JLR9 678 aaPredicted RBP29.54■■■□□ 2.32
TRAPPC3-208ENST00000616074 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.53■■■□□ 2.32
TRAPPC3-208ENST00000616074 ABCC6O95255 1503 aa29.53■■■□□ 2.32
TRAPPC3-208ENST00000616074 RGPD3A6NKT7 1758 aaPredicted RBP29.52■■■□□ 2.32
TRAPPC3-208ENST00000616074 RGPD4Q7Z3J3 1758 aa29.52■■■□□ 2.32
TRAPPC3-208ENST00000616074 CSB-PGBD3P0DP91 1061 aa29.51■■■□□ 2.31
TRAPPC3-208ENST00000616074 USP31Q70CQ4 1352 aa29.51■■■□□ 2.31
TRAPPC3-208ENST00000616074 CARD10Q9BWT7 1032 aa29.5■■■□□ 2.31
TRAPPC3-208ENST00000616074 LTN1O94822 1766 aa29.49■■■□□ 2.31
TRAPPC3-208ENST00000616074 TMC1Q8TDI8 760 aa29.49■■■□□ 2.31
TRAPPC3-208ENST00000616074 CDCA7Q9BWT1 371 aaPredicted RBP29.49■■■□□ 2.31
TRAPPC3-208ENST00000616074 NBPF14Q5TI25 921 aa29.48■■■□□ 2.31
TRAPPC3-208ENST00000616074 NME9Q86XW9 330 aa29.48■■■□□ 2.31
TRAPPC3-208ENST00000616074 MARCH10Q8NA82 808 aaPredicted RBP29.47■■■□□ 2.31
TRAPPC3-208ENST00000616074 SLC12A5Q9H2X9 1139 aa29.46■■■□□ 2.31
TRAPPC3-208ENST00000616074 PTF1AQ7RTS3 328 aa29.45■■■□□ 2.31
TRAPPC3-208ENST00000616074 HDGFL2Q7Z4V5 671 aaPredicted RBP29.45■■■□□ 2.31
TRAPPC3-208ENST00000616074 CCDC7Q96M83 1385 aa29.44■■■□□ 2.3
TRAPPC3-208ENST00000616074 BCL9O00512 1426 aa29.44■■■□□ 2.3
TRAPPC3-208ENST00000616074 EDC4Q6P2E9 1401 aaKnown RBP29.44■■■□□ 2.3
TRAPPC3-208ENST00000616074 A0A1W2PP64 1363 aa29.43■■■□□ 2.3
TRAPPC3-208ENST00000616074 BCL11BQ9C0K0 894 aaPredicted RBP29.43■■■□□ 2.3
TRAPPC3-208ENST00000616074 PLSCR1O15162 318 aa29.42■■■□□ 2.3
TRAPPC3-208ENST00000616074 TNS2Q63HR2 1409 aa29.4■■■□□ 2.3
TRAPPC3-208ENST00000616074 ERBB3P21860 1342 aa29.4■■■□□ 2.3
TRAPPC3-208ENST00000616074 EXOC5O00471 708 aa29.39■■■□□ 2.3
TRAPPC3-208ENST00000616074 PUS7Q96PZ0 661 aaKnown RBP29.39■■■□□ 2.3
TRAPPC3-208ENST00000616074 TERF2IPQ9NYB0 399 aa29.39■■■□□ 2.3
TRAPPC3-208ENST00000616074 TESK2Q96S53 571 aa29.37■■■□□ 2.29
TRAPPC3-208ENST00000616074 ST20-MTHFSA0A0A6YYL1 179 aa29.35■■■□□ 2.29
TRAPPC3-208ENST00000616074 ANO8Q9HCE9 1232 aaPredicted RBP29.34■■■□□ 2.29
TRAPPC3-208ENST00000616074 NLRP2Q9NX02 1062 aa29.34■■■□□ 2.29
TRAPPC3-208ENST00000616074 NHSQ6T4R5 1651 aa29.33■■■□□ 2.29
TRAPPC3-208ENST00000616074 PROM2Q8N271 834 aa29.32■■■□□ 2.28
TRAPPC3-208ENST00000616074 ANKRD24Q8TF21 1146 aa29.32■■■□□ 2.28
TRAPPC3-208ENST00000616074 CASZ1Q86V15 1759 aa29.31■■■□□ 2.28
TRAPPC3-208ENST00000616074 NINLQ9Y2I6 1382 aa29.31■■■□□ 2.28
TRAPPC3-208ENST00000616074 SPON1Q9HCB6 807 aa29.29■■■□□ 2.28
TRAPPC3-208ENST00000616074 KCNQ2O43526 872 aa29.28■■■□□ 2.28
TRAPPC3-208ENST00000616074 IL2RBP14784 551 aa29.28■■■□□ 2.28
TRAPPC3-208ENST00000616074 FAM208AQ9UK61 1670 aaKnown RBP29.27■■■□□ 2.28
TRAPPC3-208ENST00000616074 TRIM26Q12899 539 aaPredicted RBP29.26■■■□□ 2.27
TRAPPC3-208ENST00000616074 TXNRD1Q16881 649 aa29.25■■■□□ 2.27
TRAPPC3-208ENST00000616074 IP6K1Q92551 441 aa29.24■■■□□ 2.27
TRAPPC3-208ENST00000616074 ACSBG1Q96GR2 724 aa29.24■■■□□ 2.27
TRAPPC3-208ENST00000616074 PPP1R1BQ9UD71 204 aaPredicted RBP29.23■■■□□ 2.27
TRAPPC3-208ENST00000616074 SLC24A1O60721 1099 aa29.22■■■□□ 2.27
TRAPPC3-208ENST00000616074 COG3Q96JB2 828 aa29.22■■■□□ 2.27
TRAPPC3-208ENST00000616074 PDGFDQ9GZP0 370 aaPredicted RBP29.22■■■□□ 2.27
TRAPPC3-208ENST00000616074 BTAF1O14981 1849 aa29.22■■■□□ 2.27
TRAPPC3-208ENST00000616074 ANKRD36BQ8N2N9 1353 aa29.21■■■□□ 2.27
TRAPPC3-208ENST00000616074 LTV1Q96GA3 475 aaPredicted RBP29.2■■■□□ 2.26
TRAPPC3-208ENST00000616074 USP47Q96K76 1375 aa29.19■■■□□ 2.26
TRAPPC3-208ENST00000616074 MAP3K19Q56UN5 1328 aa29.19■■■□□ 2.26
TRAPPC3-208ENST00000616074 RGPD2P0DJD1 1756 aa29.18■■■□□ 2.26
TRAPPC3-208ENST00000616074 KAT6BQ8WYB5 2073 aa29.18■■■□□ 2.26
TRAPPC3-208ENST00000616074 FBLN1P23142 703 aa29.18■■■□□ 2.26
TRAPPC3-208ENST00000616074 STK32BQ9NY57 414 aa29.18■■■□□ 2.26
TRAPPC3-208ENST00000616074 HOXC9P31274 260 aa29.16■■■□□ 2.26
TRAPPC3-208ENST00000616074 SLC15A2Q16348 729 aa29.16■■■□□ 2.26
TRAPPC3-208ENST00000616074 PAPPAQ13219 1627 aa29.16■■■□□ 2.26
TRAPPC3-208ENST00000616074 ZBTB7AO95365 584 aa29.15■■■□□ 2.26
TRAPPC3-208ENST00000616074 TMF1P82094 1093 aa29.15■■■□□ 2.26
TRAPPC3-208ENST00000616074 MYOM1P52179 1685 aa29.14■■■□□ 2.26
TRAPPC3-208ENST00000616074 AMPHP49418 695 aa29.13■■■□□ 2.25
TRAPPC3-208ENST00000616074 SHANK3Q9BYB0 1731 aa29.11■■■□□ 2.25
TRAPPC3-208ENST00000616074 KIF20BQ96Q89 1820 aa29.11■■■□□ 2.25
TRAPPC3-208ENST00000616074 DDX54Q8TDD1 881 aaKnown RBP29.1■■■□□ 2.25
TRAPPC3-208ENST00000616074 RTL1A6NKG5 1358 aa29.1■■■□□ 2.25
TRAPPC3-208ENST00000616074 FYB1O15117 783 aa29.09■■■□□ 2.25
TRAPPC3-208ENST00000616074 GGNBP2Q9H3C7 697 aa29.09■■■□□ 2.25
TRAPPC3-208ENST00000616074 DOT1LQ8TEK3 1739 aa29.08■■■□□ 2.25
TRAPPC3-208ENST00000616074 PTGER2P43116 358 aa29.08■■■□□ 2.25
TRAPPC3-208ENST00000616074 RRS1Q15050 365 aaKnown RBP29.08■■■□□ 2.25
TRAPPC3-208ENST00000616074 ATF5Q9Y2D1 282 aaPredicted RBP29.08■■■□□ 2.25
TRAPPC3-208ENST00000616074 MEGF6O75095 1541 aa29.07■■■□□ 2.24
TRAPPC3-208ENST00000616074 LRRC4BQ9NT99 713 aa29.04■■■□□ 2.24
TRAPPC3-208ENST00000616074 ZNF827Q17R98 1081 aa29.02■■■□□ 2.24
TRAPPC3-208ENST00000616074 CDCA8Q53HL2 280 aa29.02■■■□□ 2.24
TRAPPC3-208ENST00000616074 MTFR1LQ9H019 292 aa29.02■■■□□ 2.24
TRAPPC3-208ENST00000616074 NBPF6Q5VWK0 638 aa29.01■■■□□ 2.23
TRAPPC3-208ENST00000616074 ZCRB1Q8TBF4 217 aaKnown RBP29.01■■■□□ 2.23
TRAPPC3-208ENST00000616074 NBPF4Q96M43 638 aa29.01■■■□□ 2.23
TRAPPC3-208ENST00000616074 DCAF8L1A6NGE4 600 aa28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 YY1P25490 414 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms