RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RIMBP3Q9UFD9 1639 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 TULP2O00295 520 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 GABPB1Q06547 395 aaPredicted RBP12.61□□□□□ -0.39
VPS39-214ENST00000614932 KIF3AQ9Y496 699 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 IBTKQ9P2D0 1353 aaPredicted RBP12.6□□□□□ -0.39
VPS39-214ENST00000614932 RBM25P49756 843 aaKnown RBP12.6□□□□□ -0.39
VPS39-214ENST00000614932 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS39-214ENST00000614932 RPGRIP1LQ68CZ1 1315 aa12.6□□□□□ -0.39
VPS39-214ENST00000614932 NINLQ9Y2I6 1382 aa12.6□□□□□ -0.39
VPS39-214ENST00000614932 TULP1O00294 542 aaPredicted RBP12.6□□□□□ -0.39
VPS39-214ENST00000614932 FAM193AP78312 1265 aa12.6□□□□□ -0.39
VPS39-214ENST00000614932 PDCL2Q8N4E4 241 aa12.6□□□□□ -0.39
VPS39-214ENST00000614932 GBP4Q96PP9 640 aa12.6□□□□□ -0.39
VPS39-214ENST00000614932 RICTORQ6R327 1708 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 GOLGA2Q08379 1002 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 MTHFSP49914 203 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 GGNBP2Q9H3C7 697 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 KIAA1210Q9ULL0 1709 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 PPLO60437 1756 aa12.59□□□□□ -0.39
VPS39-214ENST00000614932 ADGRB1O14514 1584 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 TSC1Q92574 1164 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 JARID2Q92833 1246 aaPredicted RBP12.58□□□□□ -0.4
VPS39-214ENST00000614932 EVC2Q86UK5 1308 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 MAPK8IP3Q9UPT6 1336 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 CAPN2P17655 700 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 WAPLQ7Z5K2 1190 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 CHMP4CQ96CF2 233 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 FEZ1Q99689 392 aa12.58□□□□□ -0.4
VPS39-214ENST00000614932 ZNF692Q9BU19 519 aaPredicted RBP12.57□□□□□ -0.4
VPS39-214ENST00000614932 FBLN1P23142 703 aa12.57□□□□□ -0.4
VPS39-214ENST00000614932 CCDC39Q9UFE4 941 aa12.57□□□□□ -0.4
VPS39-214ENST00000614932 ZMYM4Q5VZL5 1548 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 ZBTB9Q96C00 473 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 QRICH2Q9H0J4 1663 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 NEXMIFQ5QGS0 1516 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 BCAR3O75815 825 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 PTMAP06454 111 aaKnown RBP12.56□□□□□ -0.4
VPS39-214ENST00000614932 HSP90AB1P08238 724 aaKnown RBP12.56□□□□□ -0.4
VPS39-214ENST00000614932 TNPO1Q92973 898 aaKnown RBP12.56□□□□□ -0.4
VPS39-214ENST00000614932 EFCC1Q9HA90 598 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 OGFRQ9NZT2 677 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 CALCOCO1Q9P1Z2 691 aa12.56□□□□□ -0.4
VPS39-214ENST00000614932 GLI2P10070 1586 aa12.55□□□□□ -0.4
VPS39-214ENST00000614932 ESF1Q9H501 851 aaKnown RBP12.55□□□□□ -0.4
VPS39-214ENST00000614932 NEURL4Q96JN8 1562 aa12.55□□□□□ -0.4
VPS39-214ENST00000614932 PIK3C2BO00750 1634 aa12.55□□□□□ -0.4
VPS39-214ENST00000614932 MYO5BQ9ULV0 1848 aa12.55□□□□□ -0.4
VPS39-214ENST00000614932 SLFN14P0C7P3 912 aa12.54□□□□□ -0.4
VPS39-214ENST00000614932 U2AF2P26368 475 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS39-214ENST00000614932 CGNL1Q0VF96 1302 aa12.54□□□□□ -0.4
VPS39-214ENST00000614932 PATL2C9JE40 543 aaKnown RBP12.54□□□□□ -0.4
VPS39-214ENST00000614932 SLFN5Q08AF3 891 aa12.54□□□□□ -0.4
VPS39-214ENST00000614932 KIAA2012Q0VF49 1180 aa12.54□□□□□ -0.4
VPS39-214ENST00000614932 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS39-214ENST00000614932 BCL2L12Q9HB09 334 aa12.53□□□□□ -0.4
VPS39-214ENST00000614932 SBNO2Q9Y2G9 1366 aa12.53□□□□□ -0.4
VPS39-214ENST00000614932 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
VPS39-214ENST00000614932 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
VPS39-214ENST00000614932 DDIT3P35638 169 aa12.53□□□□□ -0.4
VPS39-214ENST00000614932 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS39-214ENST00000614932 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.53□□□□□ -0.4
VPS39-214ENST00000614932 NPC1L1Q9UHC9 1359 aa12.53□□□□□ -0.4
VPS39-214ENST00000614932 ZNF521Q96K83 1311 aa12.53□□□□□ -0.4
VPS39-214ENST00000614932 DIP2BQ9P265 1576 aa12.52□□□□□ -0.4
VPS39-214ENST00000614932 SETBP1Q9Y6X0 1596 aa12.52□□□□□ -0.4
VPS39-214ENST00000614932 TULP4Q9NRJ4 1543 aa12.52□□□□□ -0.41
VPS39-214ENST00000614932 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.52□□□□□ -0.41
VPS39-214ENST00000614932 ZNF445P59923 1031 aa12.52□□□□□ -0.41
VPS39-214ENST00000614932 CDK19Q9BWU1 502 aa12.52□□□□□ -0.41
VPS39-214ENST00000614932 CABP1Q9NZU7 370 aa12.52□□□□□ -0.41
VPS39-214ENST00000614932 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
VPS39-214ENST00000614932 BCL2L13Q9BXK5 485 aa12.52□□□□□ -0.41
VPS39-214ENST00000614932 TCP11L2Q8N4U5 519 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 ARHGAP31Q2M1Z3 1444 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 NCOA3Q9Y6Q9 1424 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 A0A1W2PP64 1363 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 NCKAP5LQ9HCH0 1330 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 NUTM2FA1L443 756 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 KLHL40Q2TBA0 621 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 HSCBQ8IWL3 235 aa12.51□□□□□ -0.41
VPS39-214ENST00000614932 ANKRD7Q92527 254 aa12.5□□□□□ -0.41
VPS39-214ENST00000614932 LOC102724159A0A0B4J2E5 919 aa12.5□□□□□ -0.41
VPS39-214ENST00000614932 RAB3GAP1Q15042 981 aa12.5□□□□□ -0.41
VPS39-214ENST00000614932 PWP2Q15269 919 aaKnown RBP12.5□□□□□ -0.41
VPS39-214ENST00000614932 TXNDC2Q86VQ3 553 aa12.5□□□□□ -0.41
VPS39-214ENST00000614932 PREX1Q8TCU6 1659 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 MYO3AQ8NEV4 1616 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 CEBPAP49715 358 aaPredicted RBP12.49□□□□□ -0.41
VPS39-214ENST00000614932 GRIPAP1Q4V328 841 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 C14orf37Q86TY3 774 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 YTHDC2Q9H6S0 1430 aaKnown RBP12.49□□□□□ -0.41
VPS39-214ENST00000614932 FAM177BA6PVY3 158 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 GOLGA6L22H0YM25 854 aa12.49□□□□□ -0.41
VPS39-214ENST00000614932 FEZ2Q9UHY8 353 aaPredicted RBP12.49□□□□□ -0.41
VPS39-214ENST00000614932 TNNT3P45378 269 aaPredicted RBP12.48□□□□□ -0.41
VPS39-214ENST00000614932 RBSNQ9H1K0 784 aa12.48□□□□□ -0.41
VPS39-214ENST00000614932 DDX49Q9Y6V7 483 aaKnown RBP12.48□□□□□ -0.41
VPS39-214ENST00000614932 ZMYM3Q14202 1370 aa12.48□□□□□ -0.41
VPS39-214ENST00000614932 ANKRD36BQ8N2N9 1353 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms