RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 VAMP4O75379 141 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 KRT24Q2M2I5 525 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 TAOK2Q9UL54 1235 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 F6X3S4 739 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 IFT57Q9NWB7 429 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 POLKQ9UBT6 870 aa15.34■□□□□ 0.05
MSH6-213ENST00000614496 MRPL50Q8N5N7 158 aaKnown RBP15.33■□□□□ 0.04
MSH6-213ENST00000614496 TSHZ3Q63HK5 1081 aa15.33■□□□□ 0.04
MSH6-213ENST00000614496 RBM10P98175 930 aaKnown RBP15.32■□□□□ 0.04
MSH6-213ENST00000614496 CCDC173Q0VFZ6 552 aa15.32■□□□□ 0.04
MSH6-213ENST00000614496 IQGAP3Q86VI3 1631 aa15.32■□□□□ 0.04
MSH6-213ENST00000614496 ATP7AQ04656 1500 aa15.32■□□□□ 0.04
MSH6-213ENST00000614496 BAG4O95429 457 aaKnown RBP15.32■□□□□ 0.04
MSH6-213ENST00000614496 NUDT16Q96DE0 195 aaKnown RBP15.32■□□□□ 0.04
MSH6-213ENST00000614496 ERCC6L2Q5T890 1561 aa15.31■□□□□ 0.04
MSH6-213ENST00000614496 GOLGA6L4A6NEF3 574 aa15.31■□□□□ 0.04
MSH6-213ENST00000614496 KIAA2012Q0VF49 1180 aa15.31■□□□□ 0.04
MSH6-213ENST00000614496 ERC2O15083 957 aa15.31■□□□□ 0.04
MSH6-213ENST00000614496 ZBTB7BO15156 539 aaPredicted RBP15.31■□□□□ 0.04
MSH6-213ENST00000614496 ISY1Q9ULR0 285 aaKnown RBP15.31■□□□□ 0.04
MSH6-213ENST00000614496 CHMP3Q9Y3E7 222 aa15.31■□□□□ 0.04
MSH6-213ENST00000614496 TRPM2O94759 1503 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 MAP4K4O95819 1239 aaPredicted RBP15.3■□□□□ 0.04
MSH6-213ENST00000614496 FAM69CQ0P6D2 419 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 ASXL2Q76L83 1435 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 NCKAP5LQ9HCH0 1330 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 UNC13BO14795 1591 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 SNX21Q969T3 373 aa15.3■□□□□ 0.04
MSH6-213ENST00000614496 NAP1L2Q9ULW6 460 aaPredicted RBP15.3■□□□□ 0.04
MSH6-213ENST00000614496 RBM27Q9P2N5 1060 aaKnown RBP15.29■□□□□ 0.04
MSH6-213ENST00000614496 FGD1P98174 961 aa15.29■□□□□ 0.04
MSH6-213ENST00000614496 UPF3BQ9BZI7 483 aaKnown RBP15.29■□□□□ 0.04
MSH6-213ENST00000614496 AEBP1Q8IUX7 1158 aa15.29■□□□□ 0.04
MSH6-213ENST00000614496 RPAP2Q8IXW5 612 aaPredicted RBP15.29■□□□□ 0.04
MSH6-213ENST00000614496 CLCN1P35523 988 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 OTUD7AQ8TE49 926 aaPredicted RBP15.28■□□□□ 0.04
MSH6-213ENST00000614496 IL1RAPL2Q9NP60 686 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 E9PCH4 1651 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 SYCE3A1L190 88 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 RAB3GAP1Q15042 981 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 MEIS3Q99687 375 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 RBM25P49756 843 aaKnown RBP15.28■□□□□ 0.04
MSH6-213ENST00000614496 CCDC61Q9Y6R9 512 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 DRC7Q8IY82 874 aa15.28■□□□□ 0.04
MSH6-213ENST00000614496 CLTCL1P53675 1640 aa15.27■□□□□ 0.04
MSH6-213ENST00000614496 GNAI2P04899 355 aa15.27■□□□□ 0.03
MSH6-213ENST00000614496 SDSP20132 328 aa15.27■□□□□ 0.03
MSH6-213ENST00000614496 TTC22Q5TAA0 569 aa15.27■□□□□ 0.03
MSH6-213ENST00000614496 PLEKHF1Q96S99 279 aa15.27■□□□□ 0.03
MSH6-213ENST00000614496 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.27■□□□□ 0.03
MSH6-213ENST00000614496 SURF6O75683 361 aaKnown RBP15.26■□□□□ 0.03
MSH6-213ENST00000614496 MADDQ8WXG6 1647 aa15.26■□□□□ 0.03
MSH6-213ENST00000614496 ABCC1P33527 1531 aa15.26■□□□□ 0.03
MSH6-213ENST00000614496 ZNF518AQ6AHZ1 1483 aa15.26■□□□□ 0.03
MSH6-213ENST00000614496 CD2BP2O95400 341 aaKnown RBP15.26■□□□□ 0.03
MSH6-213ENST00000614496 CWC22Q9HCG8 908 aaKnown RBP15.25■□□□□ 0.03
MSH6-213ENST00000614496 SBNO2Q9Y2G9 1366 aa15.25■□□□□ 0.03
MSH6-213ENST00000614496 PLEKHM2Q8IWE5 1019 aa15.25■□□□□ 0.03
MSH6-213ENST00000614496 ARHGAP45Q92619 1136 aa15.25■□□□□ 0.03
MSH6-213ENST00000614496 UBTFL1P0CB47 393 aaPredicted RBP15.25■□□□□ 0.03
MSH6-213ENST00000614496 ZSCAN30Q86W11 494 aa15.25■□□□□ 0.03
MSH6-213ENST00000614496 ZGPATQ8N5A5 531 aaKnown RBP15.25■□□□□ 0.03
MSH6-213ENST00000614496 NPATQ14207 1427 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 WASLO00401 505 aaPredicted RBP15.24■□□□□ 0.03
MSH6-213ENST00000614496 PHF14O94880 888 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 LRRCC1Q9C099 1032 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 GDPD2Q9HCC8 539 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 PLXNC1O60486 1568 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 GAS2L3Q86XJ1 694 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 LARP6Q9BRS8 491 aaKnown RBP15.24■□□□□ 0.03
MSH6-213ENST00000614496 DIAPH3Q9NSV4 1193 aa15.24■□□□□ 0.03
MSH6-213ENST00000614496 VPS37CA5D8V6 355 aaPredicted RBP15.23■□□□□ 0.03
MSH6-213ENST00000614496 NLRP6P59044 892 aa15.23■□□□□ 0.03
MSH6-213ENST00000614496 KLHL40Q2TBA0 621 aa15.23■□□□□ 0.03
MSH6-213ENST00000614496 PUS7Q96PZ0 661 aaKnown RBP15.23■□□□□ 0.03
MSH6-213ENST00000614496 GNAI3P08754 354 aa15.23■□□□□ 0.03
MSH6-213ENST00000614496 SLC26A8Q96RN1 970 aa15.23■□□□□ 0.03
MSH6-213ENST00000614496 PHF23Q9BUL5 403 aaPredicted RBP15.23■□□□□ 0.03
MSH6-213ENST00000614496 CCDC9Q9Y3X0 531 aaKnown RBP15.23■□□□□ 0.03
MSH6-213ENST00000614496 XPCQ01831 940 aaPredicted RBP15.22■□□□□ 0.03
MSH6-213ENST00000614496 NUTM1Q86Y26 1132 aa15.22■□□□□ 0.03
MSH6-213ENST00000614496 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.21■□□□□ 0.03
MSH6-213ENST00000614496 FIBPO43427 364 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 CCT4P50991 539 aaKnown RBP15.21■□□□□ 0.03
MSH6-213ENST00000614496 HSP90AB2PQ58FF8 381 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 SMC3Q9UQE7 1217 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 MBD3O95983 291 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 ANKRD44Q8N8A2 993 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 CHAF1AQ13111 956 aaPredicted RBP15.21■□□□□ 0.03
MSH6-213ENST00000614496 ZNF692Q9BU19 519 aaPredicted RBP15.21■□□□□ 0.03
MSH6-213ENST00000614496 DCTPP1Q9H773 170 aa15.21■□□□□ 0.03
MSH6-213ENST00000614496 ZSCAN23Q3MJ62 389 aa15.21■□□□□ 0.02
MSH6-213ENST00000614496 CCDC30Q5VVM6 783 aa15.21■□□□□ 0.02
MSH6-213ENST00000614496 EID1Q9Y6B2 187 aa15.21■□□□□ 0.02
MSH6-213ENST00000614496 TPM2P07951 284 aa15.2■□□□□ 0.02
MSH6-213ENST00000614496 CHAMP1Q96JM3 812 aa15.2■□□□□ 0.02
MSH6-213ENST00000614496 TSPY26PQ9H489 355 aa15.2■□□□□ 0.02
MSH6-213ENST00000614496 C9orf78Q9NZ63 289 aaPredicted RBP15.2■□□□□ 0.02
MSH6-213ENST00000614496 FSD2A1L4K1 749 aa15.19■□□□□ 0.02
MSH6-213ENST00000614496 TEFQ10587 303 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms