RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 VPS37DQ86XT2 251 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 MARCH6O60337 910 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 EMILIN1Q9Y6C2 1016 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 POGZQ7Z3K3 1410 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 PRKCSHP14314 528 aaPredicted RBP16.56■□□□□ 0.24
GGA3-220ENST00000613421 MCM10Q7L590 875 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 ASXL1Q8IXJ9 1541 aa16.56■□□□□ 0.24
GGA3-220ENST00000613421 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.55■□□□□ 0.24
GGA3-220ENST00000613421 PES1O00541 588 aaKnown RBP16.55■□□□□ 0.24
GGA3-220ENST00000613421 PDCP20941 246 aa16.55■□□□□ 0.24
GGA3-220ENST00000613421 DCTN1Q14203 1278 aa16.55■□□□□ 0.24
GGA3-220ENST00000613421 FBXO31Q5XUX0 539 aaPredicted RBP16.55■□□□□ 0.24
GGA3-220ENST00000613421 DENND4BO75064 1496 aaPredicted RBP16.55■□□□□ 0.24
GGA3-220ENST00000613421 ERICH2A1L162 156 aa16.55■□□□□ 0.24
GGA3-220ENST00000613421 MCM4P33991 863 aa16.55■□□□□ 0.24
GGA3-220ENST00000613421 AMER1Q5JTC6 1135 aaPredicted RBP16.54■□□□□ 0.24
GGA3-220ENST00000613421 AMOTL1Q8IY63 956 aa16.54■□□□□ 0.24
GGA3-220ENST00000613421 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
GGA3-220ENST00000613421 CCDC39Q9UFE4 941 aa16.54■□□□□ 0.24
GGA3-220ENST00000613421 SRGAP3O43295 1099 aa16.54■□□□□ 0.24
GGA3-220ENST00000613421 NOL10Q9BSC4 688 aaKnown RBP16.54■□□□□ 0.24
GGA3-220ENST00000613421 WASLO00401 505 aaPredicted RBP16.54■□□□□ 0.24
GGA3-220ENST00000613421 TRIM27P14373 513 aa16.54■□□□□ 0.24
GGA3-220ENST00000613421 LETM1O95202 739 aaPredicted RBP16.53■□□□□ 0.24
GGA3-220ENST00000613421 HOOK1Q9UJC3 728 aaKnown RBP16.53■□□□□ 0.24
GGA3-220ENST00000613421 SHANK2Q9UPX8 1470 aa16.53■□□□□ 0.24
GGA3-220ENST00000613421 TPM1P09493 284 aa16.53■□□□□ 0.24
GGA3-220ENST00000613421 ZNF592Q92610 1267 aa16.53■□□□□ 0.24
GGA3-220ENST00000613421 ANKLE2Q86XL3 938 aa16.53■□□□□ 0.24
GGA3-220ENST00000613421 ANO8Q9HCE9 1232 aaPredicted RBP16.52■□□□□ 0.24
GGA3-220ENST00000613421 MIS18AQ9NYP9 233 aa16.52■□□□□ 0.24
GGA3-220ENST00000613421 CYP46A1Q9Y6A2 500 aa16.52■□□□□ 0.24
GGA3-220ENST00000613421 EIF2AK4Q9P2K8 1649 aaKnown RBP16.52■□□□□ 0.24
GGA3-220ENST00000613421 ARHGEF12Q9NZN5 1544 aa16.52■□□□□ 0.24
GGA3-220ENST00000613421 ANKRD36BQ8N2N9 1353 aa16.52■□□□□ 0.24
GGA3-220ENST00000613421 MAP4K4O95819 1239 aaPredicted RBP16.52■□□□□ 0.24
GGA3-220ENST00000613421 BTBD11A6QL63 1104 aa16.52■□□□□ 0.23
GGA3-220ENST00000613421 SAFBQ15424 915 aaKnown RBP eCLIP16.52■□□□□ 0.23
GGA3-220ENST00000613421 TSR1Q2NL82 804 aaKnown RBP16.52■□□□□ 0.23
GGA3-220ENST00000613421 TSPY26PQ9H489 355 aa16.52■□□□□ 0.23
GGA3-220ENST00000613421 DNMT1P26358 1616 aaKnown RBP16.52■□□□□ 0.23
GGA3-220ENST00000613421 FIBPO43427 364 aa16.51■□□□□ 0.23
GGA3-220ENST00000613421 SIL1Q9H173 461 aa16.51■□□□□ 0.23
GGA3-220ENST00000613421 IL1RAPL2Q9NP60 686 aa16.51■□□□□ 0.23
GGA3-220ENST00000613421 CCDC173Q0VFZ6 552 aa16.5■□□□□ 0.23
GGA3-220ENST00000613421 FBXW7Q969H0 707 aa16.5■□□□□ 0.23
GGA3-220ENST00000613421 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
GGA3-220ENST00000613421 EXOC6BQ9Y2D4 811 aa16.5■□□□□ 0.23
GGA3-220ENST00000613421 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
GGA3-220ENST00000613421 IL27Q8NEV9 243 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 PZPP20742 1482 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 CABP4P57796 275 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 KIF6Q6ZMV9 814 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 TESK2Q96S53 571 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 GOLGA6L1Q8N7Z2 621 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 FAM13BQ9NYF5 915 aa16.49■□□□□ 0.23
GGA3-220ENST00000613421 IL16Q14005 1332 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 TPM2P07951 284 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 MYL6BP14649 208 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 VPS53Q5VIR6 699 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 AACSQ86V21 672 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 AEBP1Q8IUX7 1158 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 NOC3LQ8WTT2 800 aaKnown RBP16.48■□□□□ 0.23
GGA3-220ENST00000613421 GRPEL1Q9HAV7 217 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 IGHDP01880 384 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 TBC1D2BQ9UPU7 963 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 ANKRD1Q15327 319 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 SDF4Q9BRK5 362 aa16.48■□□□□ 0.23
GGA3-220ENST00000613421 KCNH5Q8NCM2 988 aa16.47■□□□□ 0.23
GGA3-220ENST00000613421 NAT10Q9H0A0 1025 aaKnown RBP16.47■□□□□ 0.23
GGA3-220ENST00000613421 ANKRD20A12PQ8NF67 263 aa16.47■□□□□ 0.23
GGA3-220ENST00000613421 TRAPPC8Q9Y2L5 1435 aa16.47■□□□□ 0.23
GGA3-220ENST00000613421 SMARCA5O60264 1052 aaPredicted RBP16.47■□□□□ 0.23
GGA3-220ENST00000613421 CCAR2Q8N163 923 aaKnown RBP16.47■□□□□ 0.23
GGA3-220ENST00000613421 VSIG10Q8N0Z9 540 aa16.46■□□□□ 0.23
GGA3-220ENST00000613421 MX1P20591 662 aa16.46■□□□□ 0.23
GGA3-220ENST00000613421 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
GGA3-220ENST00000613421 CCDC158Q5M9N0 1113 aa16.46■□□□□ 0.22
GGA3-220ENST00000613421 CWC27Q6UX04 472 aaKnown RBP16.46■□□□□ 0.22
GGA3-220ENST00000613421 HOMER1Q86YM7 354 aa16.46■□□□□ 0.22
GGA3-220ENST00000613421 PPP6R1Q9UPN7 881 aa16.46■□□□□ 0.22
GGA3-220ENST00000613421 A2MP01023 1474 aa16.45■□□□□ 0.22
GGA3-220ENST00000613421 STRN4Q9NRL3 753 aa16.45■□□□□ 0.22
GGA3-220ENST00000613421 CCDC47Q96A33 483 aaKnown RBP16.45■□□□□ 0.22
GGA3-220ENST00000613421 R3HCC1Q9Y3T6 440 aaKnown RBP16.45■□□□□ 0.22
GGA3-220ENST00000613421 TAF7Q15545 349 aaPredicted RBP16.45■□□□□ 0.22
GGA3-220ENST00000613421 TTC39AQ5SRH9 613 aa16.45■□□□□ 0.22
GGA3-220ENST00000613421 NUTM1Q86Y26 1132 aa16.45■□□□□ 0.22
GGA3-220ENST00000613421 KINO60870 393 aaKnown RBP16.44■□□□□ 0.22
GGA3-220ENST00000613421 TBC1D2Q9BYX2 928 aa16.44■□□□□ 0.22
GGA3-220ENST00000613421 XPCQ01831 940 aaPredicted RBP16.44■□□□□ 0.22
GGA3-220ENST00000613421 DHX16O60231 1041 aaKnown RBP16.44■□□□□ 0.22
GGA3-220ENST00000613421 TOM1L2Q6ZVM7 507 aa16.44■□□□□ 0.22
GGA3-220ENST00000613421 KIF1BPQ96EK5 621 aa16.44■□□□□ 0.22
GGA3-220ENST00000613421 PTPRCP08575 1304 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 BLOC1S2Q6QNY1 142 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 TRIM5Q9C035 493 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 PDRG1Q9NUG6 133 aa16.43■□□□□ 0.22
GGA3-220ENST00000613421 POLR3AO14802 1390 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms